Variant report

Variant	rs16832035
Chromosome Location	chr2:190645281-190645282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190639387..190641979-chr2:190643481..190646316,2	K562	blood:
2	chr2:190626354..190628880-chr2:190644961..190646974,2	K562	blood:
3	chr2:190639477..190641367-chr2:190643907..190646225,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253559	Chromatin interaction
ENSG00000128694	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1233264	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12622938	0.85[EUR][1000 genomes]
rs16831841	0.85[EUR][1000 genomes]
rs16831880	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831887	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16831909	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16831964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17199060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3791769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3791772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4666785	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4667307	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5742959	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5742960	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5743002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5743006	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5743010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5743022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16832035	ORMDL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190627800-190648200	Weak transcription	Gastric	stomach
2	chr2:190628200-190645600	Weak transcription	Pancreas	Pancrea
3	chr2:190628200-190648000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:190628200-190648000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:190628200-190648200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:190628400-190648000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:190628600-190647000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:190628600-190647200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:190628600-190647200	Weak transcription	Stomach Mucosa	stomach
10	chr2:190628600-190648400	Weak transcription	Small Intestine	intestine
11	chr2:190629000-190647200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:190629800-190647000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:190630000-190646600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:190630800-190647000	Strong transcription	HSMM	muscle
15	chr2:190631000-190646200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:190631200-190645400	Strong transcription	Liver	Liver
17	chr2:190631200-190646200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:190631200-190647200	Strong transcription	Fetal Thymus	thymus
19	chr2:190631400-190646000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:190631400-190646000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:190631400-190646800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr2:190631600-190645600	Strong transcription	Primary B cells from cord blood	blood
23	chr2:190631600-190646200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:190631600-190647000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr2:190632000-190646600	Strong transcription	Placenta	Placenta
26	chr2:190632800-190647200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr2:190633200-190646200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:190633200-190646800	Strong transcription	HMEC	breast
29	chr2:190633600-190646600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:190634000-190646400	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr2:190634000-190647000	Strong transcription	Osteobl	bone
32	chr2:190634200-190647400	Strong transcription	Fetal Muscle Trunk	muscle
33	chr2:190634600-190645800	Strong transcription	Adipose Nuclei	Adipose
34	chr2:190634600-190646200	Strong transcription	Primary hematopoietic stem cells	blood
35	chr2:190634600-190646400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr2:190634600-190646600	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr2:190634600-190647000	Strong transcription	NH-A	brain
38	chr2:190634600-190647200	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr2:190634600-190647200	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr2:190634600-190647200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr2:190635000-190647000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr2:190635000-190647200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr2:190635200-190645800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr2:190635200-190646400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr2:190635200-190647200	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr2:190636200-190646800	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr2:190636400-190647000	Weak transcription	Aorta	Aorta
48	chr2:190637000-190646400	Strong transcription	Fetal Lung	lung
49	chr2:190637200-190645800	Strong transcription	Fetal Kidney	kidney
50	chr2:190638000-190645800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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