Variant report

Variant	rs16840103
Chromosome Location	chr3:132976744-132976745
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16840165	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16840167	1.00[AMR][1000 genomes]
rs16840170	1.00[AMR][1000 genomes]
rs16840174	1.00[AMR][1000 genomes]
rs1877585	1.00[AMR][1000 genomes]
rs57463795	1.00[AMR][1000 genomes]
rs57685642	1.00[AMR][1000 genomes]
rs58951698	1.00[AMR][1000 genomes]
rs59537840	1.00[AMR][1000 genomes]
rs6792283	1.00[AMR][1000 genomes]
rs7614988	1.00[AMR][1000 genomes]
rs7646941	1.00[AMR][1000 genomes]
rs7651300	1.00[AMR][1000 genomes]
rs9968203	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv980103	chr3:132975869-132988869	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132957200-132981400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:132968000-132984200	Weak transcription	Psoas Muscle	Psoas
3	chr3:132971400-132977600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:132974800-132980400	Weak transcription	Fetal Brain Male	brain
5	chr3:132975200-132977400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:132975600-132976800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:132975600-132977600	Enhancers	NH-A	brain
8	chr3:132975600-132977800	Enhancers	Osteobl	bone
9	chr3:132975600-132979200	Enhancers	NHEK	skin
10	chr3:132975600-132979600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:132975800-132977200	Enhancers	HSMM	muscle
12	chr3:132975800-132977800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:132976000-132981200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:132976400-132987000	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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