Variant report

Variant	rs16840167
Chromosome Location	chr3:132996852-132996853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16840103	1.00[AMR][1000 genomes]
rs16840165	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16840170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16840174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1877585	1.00[AMR][1000 genomes]
rs4293703	1.00[YRI][hapmap]
rs57463795	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57685642	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58951698	1.00[AMR][1000 genomes]
rs59537840	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6792283	1.00[AMR][1000 genomes]
rs7614988	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7646941	1.00[AMR][1000 genomes]
rs7651300	1.00[AMR][1000 genomes]
rs9968203	1.00[AMR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132985400-133002800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:132988400-132998400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:132988800-133002800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:132990200-133002800	Weak transcription	Lung	lung
5	chr3:132990600-133002800	Weak transcription	Right Atrium	heart
6	chr3:132994200-132999800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:132994800-132997200	Enhancers	HSMMtube	muscle
8	chr3:132995200-132997000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:132995800-132999600	Weak transcription	Psoas Muscle	Psoas
10	chr3:132995800-133001600	Weak transcription	Brain Germinal Matrix	brain
11	chr3:132995800-133005400	Weak transcription	Fetal Lung	lung
12	chr3:132996000-133003000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:132996200-133012200	Weak transcription	HSMM	muscle
14	chr3:132996400-132997200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:132996400-132997400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:132996400-132997400	Enhancers	HUVEC	blood vessel
17	chr3:132996600-132997200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:132996600-132997200	Enhancers	Osteobl	bone
19	chr3:132996600-132997400	Enhancers	NH-A	brain
20	chr3:132996600-132998200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:132996600-133002400	Weak transcription	Fetal Brain Female	brain
22	chr3:132996600-133003400	Weak transcription	Fetal Brain Male	brain
23	chr3:132996800-132997000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:132996800-132997200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:132996800-132997400	Enhancers	NHEK	skin
26	chr3:132996800-132997600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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