Variant report

Variant	rs1877585
Chromosome Location	chr3:133048176-133048177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16840103	1.00[AMR][1000 genomes]
rs16840165	1.00[AMR][1000 genomes]
rs16840167	1.00[AMR][1000 genomes]
rs16840170	1.00[AMR][1000 genomes]
rs16840174	1.00[AMR][1000 genomes]
rs57463795	1.00[AMR][1000 genomes]
rs57685642	1.00[AMR][1000 genomes]
rs58951698	1.00[AMR][1000 genomes]
rs59537840	1.00[AMR][1000 genomes]
rs6792283	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7614988	1.00[AMR][1000 genomes]
rs7646941	1.00[AMR][1000 genomes]
rs7651300	1.00[AMR][1000 genomes]
rs9968203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133045600-133049200	Enhancers	Fetal Lung	lung
2	chr3:133046800-133049000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:133046800-133049400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:133046800-133049600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:133047200-133048800	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:133047200-133049200	Enhancers	Fetal Brain Female	brain
7	chr3:133047200-133049400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:133047200-133049400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:133047200-133049600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:133047200-133049600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:133047400-133048400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:133047400-133048600	Enhancers	Fetal Brain Male	brain
13	chr3:133047400-133049200	Enhancers	Fetal Muscle Leg	muscle
14	chr3:133047400-133049400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:133047400-133049600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:133047600-133049000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:133047600-133049600	Enhancers	Brain Germinal Matrix	brain
18	chr3:133047800-133048400	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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