The 2.0 version of rSNPBase

Variant report

Variant rs16841576
Chromosome Location chr3:99365590-99365591
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:99358000-99369400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr3:99360000-99370200 Weak transcription Right Atrium heart
3 chr3:99361200-99366200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr3:99361200-99366600 Weak transcription HUES6 Cell Line embryonic stem cell
5 chr3:99361600-99366600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr3:99362600-99367600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
7 chr3:99362600-99368800 Enhancers Colon Smooth Muscle Colon
8 chr3:99362800-99369200 Enhancers NHLF lung
9 chr3:99363000-99365600 Genic enhancers Osteobl bone
10 chr3:99363200-99367400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr3:99363800-99365600 Enhancers Stomach Smooth Muscle stomach
12 chr3:99363800-99366600 Enhancers NH-A brain
13 chr3:99363800-99367800 Enhancers HMEC breast
14 chr3:99363800-99369000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr3:99364000-99367000 Enhancers NHDF-Ad bronchial
16 chr3:99364000-99370200 Weak transcription Ovary ovary
17 chr3:99364200-99366000 Flanking Active TSS NHEK skin
18 chr3:99364400-99365800 Enhancers Adipose Nuclei Adipose
19 chr3:99364400-99366800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr3:99364400-99367000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr3:99364400-99367400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
22 chr3:99364400-99370000 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr3:99364800-99367000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr3:99364800-99368600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr3:99365000-99365600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr3:99365000-99366000 Weak transcription Rectal Smooth Muscle rectum
27 chr3:99365000-99366600 Weak transcription Brain Germinal Matrix brain
28 chr3:99365000-99366600 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr3:99365000-99367000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr3:99365000-99367000 Weak transcription Fetal Muscle Leg muscle
31 chr3:99365000-99370200 Weak transcription ES-WA7 Cell Line embryonic stem cell
32 chr3:99365000-99370200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr3:99365000-99370400 Weak transcription HUES64 Cell Line embryonic stem cell
34 chr3:99365000-99371600 Enhancers Breast Myoepithelial Primary Cells Breast
35 chr3:99365200-99366400 Genic enhancers Muscle Satellite Cultured Cells --
36 chr3:99365200-99367000 Weak transcription Aorta Aorta
37 chr3:99365200-99368000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr3:99365200-99370200 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr3:99365400-99365600 Enhancers HUVEC blood vessel
40 chr3:99365400-99366000 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr3:99365400-99366400 Strong transcription HSMM muscle
42 chr3:99365400-99366800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr3:99365400-99366800 Weak transcription HSMMtube muscle
44 chr3:99365400-99367000 Weak transcription Stomach Mucosa stomach
45 chr3:99365400-99367400 Weak transcription Fetal Stomach stomach
46 chr3:99365400-99369800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015