Variant report

Variant	rs73860415
Chromosome Location	chr3:99438315-99438316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16841576	1.00[EUR][1000 genomes]
rs2036985	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56274829	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57908758	1.00[EUR][1000 genomes]
rs58139192	1.00[EUR][1000 genomes]
rs73860409	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73860410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73860411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73860417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73860418	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73860419	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99411400-99439600	Weak transcription	NHEK	skin
2	chr3:99423800-99440000	Weak transcription	Adipose Nuclei	Adipose
3	chr3:99426600-99439800	Weak transcription	NHLF	lung
4	chr3:99428000-99439600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:99428200-99439800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:99428200-99442800	Weak transcription	Aorta	Aorta
7	chr3:99428400-99439600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:99433600-99449200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:99434000-99440000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:99435800-99439400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:99435800-99440600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:99436000-99439000	Weak transcription	NH-A	brain
13	chr3:99436000-99439800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:99436000-99440000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:99436400-99439800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:99436400-99439800	Weak transcription	HSMMtube	muscle
17	chr3:99436400-99440400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:99437200-99438400	Weak transcription	Osteobl	bone
19	chr3:99437200-99439800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:99437200-99439800	Weak transcription	Ovary	ovary
21	chr3:99437600-99439600	Weak transcription	NHDF-Ad	bronchial
22	chr3:99437800-99438800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:99438000-99439800	Weak transcription	Psoas Muscle	Psoas
24	chr3:99438200-99438400	Strong transcription	HSMM	muscle
25	chr3:99438200-99438600	Genic enhancers	Muscle Satellite Cultured Cells	--
26	chr3:99438200-99442200	Enhancers	HUVEC	blood vessel

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