Variant report

Variant	rs57908758
Chromosome Location	chr3:99645734-99645735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99644955..99646992-chr3:99649080..99650758,2	MCF-7	breast:
2	chr3:99639154..99641723-chr3:99643232..99645940,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2036985	1.00[EUR][1000 genomes]
rs56274829	1.00[EUR][1000 genomes]
rs73860409	1.00[EUR][1000 genomes]
rs73860410	1.00[EUR][1000 genomes]
rs73860411	1.00[EUR][1000 genomes]
rs73860415	1.00[EUR][1000 genomes]
rs73860417	1.00[EUR][1000 genomes]
rs73860418	1.00[EUR][1000 genomes]
rs73860419	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99604600-99648200	Weak transcription	Primary T cells from cord blood	blood
2	chr3:99634400-99647400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr3:99640000-99648400	Weak transcription	HSMMtube	muscle
4	chr3:99640200-99648400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:99640200-99648400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:99640400-99646200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:99640400-99647000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:99640400-99648400	Weak transcription	Gastric	stomach
9	chr3:99640400-99648600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:99640400-99656000	Weak transcription	GM12878-XiMat	blood
11	chr3:99640400-99656600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:99640400-99656800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:99641000-99648200	Weak transcription	Psoas Muscle	Psoas
14	chr3:99641200-99646600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:99641200-99648400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:99641400-99654200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:99642200-99647000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:99642200-99654000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:99643200-99646600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr3:99643800-99646600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr3:99643800-99646600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr3:99643800-99646800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr3:99644000-99649800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:99644200-99646000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr3:99644200-99646000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:99644200-99646000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:99644200-99646600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr3:99644400-99645800	Enhancers	HUVEC	blood vessel
29	chr3:99644400-99647000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr3:99644400-99648400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:99644400-99648400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:99644600-99646000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr3:99644800-99645800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr3:99644800-99645800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr3:99644800-99645800	Weak transcription	Right Atrium	heart
36	chr3:99644800-99645800	Weak transcription	Spleen	Spleen
37	chr3:99644800-99646400	Weak transcription	Fetal Stomach	stomach
38	chr3:99644800-99646600	Weak transcription	Fetal Muscle Leg	muscle
39	chr3:99644800-99646600	Weak transcription	Ovary	ovary
40	chr3:99644800-99646800	Weak transcription	Adipose Nuclei	Adipose
41	chr3:99644800-99647200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:99644800-99648000	Weak transcription	Left Ventricle	heart
43	chr3:99644800-99648000	Weak transcription	Right Ventricle	heart
44	chr3:99644800-99648200	Weak transcription	Brain Anterior Caudate	brain
45	chr3:99644800-99648400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:99644800-99648400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr3:99644800-99648400	Weak transcription	Brain Hippocampus Middle	brain
48	chr3:99644800-99648400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr3:99644800-99648400	Weak transcription	Brain Substantia Nigra	brain
50	chr3:99644800-99648400	Weak transcription	A549	lung

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