Variant report

Variant	rs2036985
Chromosome Location	chr3:99428731-99428732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16841576	1.00[EUR][1000 genomes]
rs56274829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57908758	1.00[EUR][1000 genomes]
rs58139192	1.00[EUR][1000 genomes]
rs73860409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73860410	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73860411	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73860415	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73860417	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73860418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73860419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99397600-99432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99411400-99439600	Weak transcription	NHEK	skin
3	chr3:99419800-99430400	Weak transcription	Left Ventricle	heart
4	chr3:99420000-99428800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:99420000-99429400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:99420000-99432800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:99420000-99433000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:99420600-99430400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:99422600-99431200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:99423400-99432400	Genic enhancers	Osteobl	bone
11	chr3:99423800-99440000	Weak transcription	Adipose Nuclei	Adipose
12	chr3:99425600-99433000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:99426600-99439800	Weak transcription	NHLF	lung
14	chr3:99427000-99434200	Genic enhancers	Muscle Satellite Cultured Cells	--
15	chr3:99427200-99432600	Genic enhancers	HUVEC	blood vessel
16	chr3:99427400-99431000	Weak transcription	NHDF-Ad	bronchial
17	chr3:99427600-99432600	Weak transcription	HSMMtube	muscle
18	chr3:99427800-99432600	Strong transcription	HSMM	muscle
19	chr3:99428000-99430000	Strong transcription	NH-A	brain
20	chr3:99428000-99439600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:99428200-99429600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:99428200-99436800	Weak transcription	Ovary	ovary
23	chr3:99428200-99439800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:99428200-99442800	Weak transcription	Aorta	Aorta
25	chr3:99428400-99431400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:99428400-99439600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:99428600-99428800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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