Variant report

Variant	rs16844502
Chromosome Location	chr1:172435105-172435106
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1014928	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1014929	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1014930	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10489282	1.00[ASW][hapmap];1.00[CEU][hapmap]
rs1063412	1.00[YRI][hapmap]
rs16844474	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16844498	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844500	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844519	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844585	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs41310899	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172422600-172435400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172425800-172435400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:172426000-172436000	Weak transcription	Fetal Intestine Large	intestine
4	chr1:172430200-172435400	Weak transcription	HepG2	liver
5	chr1:172430400-172435200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:172430400-172435400	Weak transcription	HMEC	breast
7	chr1:172430600-172435200	Weak transcription	NHEK	skin
8	chr1:172430600-172436000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:172431200-172435400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:172431600-172435400	Weak transcription	A549	lung
11	chr1:172434600-172435400	Flanking Active TSS	Fetal Heart	heart
12	chr1:172434600-172435800	Enhancers	K562	blood
13	chr1:172434600-172436400	Enhancers	Fetal Muscle Leg	muscle
14	chr1:172434600-172436800	Enhancers	Pancreas	Pancrea
15	chr1:172434600-172437000	Enhancers	HSMMtube	muscle
16	chr1:172434800-172435800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr1:172435000-172435400	Weak transcription	Left Ventricle	heart
18	chr1:172435000-172436000	Weak transcription	Psoas Muscle	Psoas
19	chr1:172435000-172437000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links