Variant report

Variant	rs16844585
Chromosome Location	chr1:172453197-172453198
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172451991..172454175-chr1:172481120..172484587,3	MCF-7	breast:
2	chr1:172445585..172447486-chr1:172451188..172453477,2	MCF-7	breast:
3	chr1:172452518..172456235-chr1:172461776..172466798,6	MCF-7	breast:
4	chr1:172451708..172453272-chr1:172488992..172491828,2	MCF-7	breast:
5	chr1:172448493..172450937-chr1:172451011..172455135,3	K562	blood:
6	chr1:172451102..172453458-chr1:172467272..172470611,3	MCF-7	breast:
7	chr1:172443532..172455037-chr1:172498094..172506505,15	MCF-7	breast:
8	chr1:172452121..172455288-chr1:172499737..172503274,3	MCF-7	breast:
9	chr1:172418554..172420719-chr1:172452258..172454157,2	MCF-7	breast:
10	chr1:172452109..172457125-chr1:172462755..172466432,5	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1014928	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs1014929	0.83[EUR][1000 genomes]
rs1014930	0.84[EUR][1000 genomes]
rs10489282	1.00[CEU][hapmap]
rs1063412	1.00[YRI][hapmap]
rs16844474	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16844498	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs16844500	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs16844502	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs16844519	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs41310899	0.85[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172444200-172456200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:172448600-172453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:172448600-172453200	Weak transcription	NHEK	skin
4	chr1:172450200-172456200	Weak transcription	Primary T cells from cord blood	blood
5	chr1:172450800-172456400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr1:172452000-172457400	Weak transcription	Fetal Intestine Small	intestine
7	chr1:172452400-172453200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr1:172452600-172454200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:172452600-172456600	Weak transcription	Fetal Intestine Large	intestine
10	chr1:172452800-172453200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:172452800-172453800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:172452800-172454000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:172452800-172454000	Enhancers	HMEC	breast
14	chr1:172453000-172453200	Enhancers	Placenta	Placenta
15	chr1:172453000-172453800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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