Variant report

Variant	rs16844519
Chromosome Location	chr1:172437908-172437909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1014928	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1014929	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1014930	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10489282	1.00[CEU][hapmap]
rs1063412	1.00[YRI][hapmap]
rs10752953	1.00[CHB][hapmap]
rs16844474	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16844498	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844500	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844502	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844585	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs41310899	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs743948	1.00[CEU][hapmap]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172435400-172439000	Enhancers	HepG2	liver
2	chr1:172435400-172439200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr1:172435600-172439200	Weak transcription	Left Ventricle	heart
4	chr1:172435800-172441800	Weak transcription	K562	blood
5	chr1:172436200-172438000	Enhancers	HSMM	muscle
6	chr1:172436400-172440200	Weak transcription	Right Atrium	heart
7	chr1:172436800-172438800	Weak transcription	Fetal Intestine Small	intestine
8	chr1:172436800-172439000	Weak transcription	Pancreas	Pancrea
9	chr1:172436800-172444200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:172437000-172439400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:172437000-172440800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:172437000-172441200	Weak transcription	NHEK	skin
13	chr1:172437000-172441600	Weak transcription	HMEC	breast
14	chr1:172437000-172444400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:172437400-172438200	Enhancers	HSMMtube	muscle
16	chr1:172437400-172438400	Weak transcription	Fetal Intestine Large	intestine
17	chr1:172437600-172438200	Enhancers	Fetal Muscle Leg	muscle
18	chr1:172437800-172439000	Weak transcription	A549	lung
19	chr1:172437800-172445400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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