Variant report

Variant	rs10752953
Chromosome Location	chr1:172396951-172396952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172396564..172399537-chr1:172408525..172411857,4	K562	blood:
2	chr1:172395014..172399415-chr1:172410981..172414521,4	MCF-7	breast:
3	chr1:172396812..172398792-chr1:172499531..172501174,2	MCF-7	breast:
4	chr1:172395680..172397995-chr1:172501329..172504075,3	MCF-7	breast:
5	chr1:172393925..172397088-chr1:172412072..172414772,3	K562	blood:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction
ENSG00000135845	Chromatin interaction
ENSG00000180999	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10489286	1.00[ASN][1000 genomes]
rs1052256	1.00[ASN][1000 genomes]
rs1132148	1.00[ASN][1000 genomes]
rs12031216	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844519	1.00[CHB][hapmap]
rs17277932	1.00[ASN][1000 genomes]
rs17369011	1.00[ASN][1000 genomes]
rs2001131	0.92[CEU][hapmap]
rs2051628	0.94[CEU][hapmap]
rs2157451	1.00[CEU][hapmap]
rs2213739	1.00[CEU][hapmap]
rs2230471	1.00[CEU][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2422139	0.82[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422142	0.82[CEU][hapmap]
rs4916185	1.00[ASN][1000 genomes]
rs4916255	1.00[ASN][1000 genomes]
rs4916256	1.00[CEU][hapmap];0.81[GIH][hapmap];0.94[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916259	0.94[CEU][hapmap]
rs56259646	1.00[ASN][1000 genomes]
rs56340136	1.00[ASN][1000 genomes]
rs61806074	1.00[ASN][1000 genomes]
rs61806089	1.00[ASN][1000 genomes]
rs61806090	1.00[ASN][1000 genomes]
rs61806091	1.00[ASN][1000 genomes]
rs6660051	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6667786	0.82[CEU][hapmap]
rs6674018	1.00[ASN][1000 genomes]
rs6683444	0.93[CEU][hapmap]
rs6700880	0.94[CEU][hapmap]
rs916365	0.94[CEU][hapmap]
rs9425307	1.00[ASN][1000 genomes]
rs9425309	1.00[ASN][1000 genomes]
rs9425314	1.00[CEU][hapmap];0.81[GIH][hapmap];0.81[MEX][hapmap];0.94[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425315	1.00[ASN][1000 genomes]
rs9425610	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425618	1.00[CEU][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes]
rs978875	1.00[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172373000-172411800	Weak transcription	Brain Angular Gyrus	brain
2	chr1:172384400-172398400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:172385800-172411000	Weak transcription	Fetal Stomach	stomach
4	chr1:172391000-172410600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:172391000-172412200	Weak transcription	HSMMtube	muscle
6	chr1:172391400-172398000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:172391400-172400800	Weak transcription	Pancreas	Pancrea
8	chr1:172391400-172409400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:172391800-172411000	Weak transcription	Spleen	Spleen
10	chr1:172392000-172412200	Weak transcription	Right Ventricle	heart
11	chr1:172392200-172411000	Weak transcription	Left Ventricle	heart
12	chr1:172392400-172400400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:172392400-172400800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:172392400-172401000	Weak transcription	Lung	lung
15	chr1:172392800-172400200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:172395400-172397800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:172395600-172397600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:172395600-172412200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr1:172395800-172397000	Flanking Active TSS	Dnd41	blood
20	chr1:172395800-172400600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr1:172395800-172400600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr1:172395800-172400600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr1:172395800-172401000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:172395800-172402800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr1:172396000-172397000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
26	chr1:172396000-172397200	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr1:172396000-172397200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr1:172396000-172397200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr1:172396000-172397800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr1:172396000-172397800	Enhancers	Fetal Thymus	thymus
31	chr1:172396000-172400800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:172396200-172397000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:172396200-172397000	Enhancers	GM12878-XiMat	blood
34	chr1:172396200-172397200	Enhancers	Right Atrium	heart
35	chr1:172396200-172397200	Enhancers	Thymus	Thymus
36	chr1:172396200-172412000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:172396400-172397200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr1:172396400-172397200	Enhancers	Small Intestine	intestine
39	chr1:172396400-172400600	Weak transcription	K562	blood
40	chr1:172396400-172402800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr1:172396600-172397200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr1:172396600-172397800	Enhancers	Primary T cells fromperipheralblood	blood
43	chr1:172396600-172402200	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr1:172396600-172411000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr1:172396600-172412400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr1:172396800-172397000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:172396800-172397000	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr1:172396800-172397200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr1:172396800-172400400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr1:172396800-172400600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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