Variant report

Variant	rs2422142
Chromosome Location	chr1:172454826-172454827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172454354..172456724-chr1:172501278..172503488,2	K562	blood:
2	chr1:172453458..172456282-chr1:172459104..172461088,2	MCF-7	breast:
3	chr1:172452518..172456235-chr1:172461776..172466798,6	MCF-7	breast:
4	chr1:172448523..172450358-chr1:172453507..172455135,2	K562	blood:
5	chr1:172453456..172456009-chr1:172482062..172484146,2	MCF-7	breast:
6	chr1:172446186..172449465-chr1:172453290..172456468,4	MCF-7	breast:
7	chr1:172448493..172450937-chr1:172451011..172455135,3	K562	blood:
8	chr1:172443532..172455037-chr1:172498094..172506505,15	MCF-7	breast:
9	chr1:172452121..172455288-chr1:172499737..172503274,3	MCF-7	breast:
10	chr1:172452109..172457125-chr1:172462755..172466432,5	MCF-7	breast:
11	chr1:172453305..172455267-chr1:172457496..172460172,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10752953	0.82[CEU][hapmap]
rs2001131	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs2032531	0.88[EUR][1000 genomes]
rs2051628	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs2157451	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs2213739	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs2230471	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs2422139	0.82[CEU][hapmap]
rs4916256	0.82[CEU][hapmap]
rs4916259	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs6660051	0.82[CEU][hapmap]
rs6667786	0.88[EUR][1000 genomes]
rs6683444	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs6700880	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs916365	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs9425314	0.82[CEU][hapmap]
rs9425618	0.82[CEU][hapmap];0.81[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172444200-172456200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:172450200-172456200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:172450800-172456400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr1:172452000-172457400	Weak transcription	Fetal Intestine Small	intestine
5	chr1:172452600-172456600	Weak transcription	Fetal Intestine Large	intestine
6	chr1:172453200-172456200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr1:172453200-172456600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:172453800-172455000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:172453800-172456400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:172454200-172456200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr1:172454200-172456600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr1:172454200-172466000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:172454600-172455200	Enhancers	NHEK	skin
14	chr1:172454600-172456000	Weak transcription	Placenta	Placenta
15	chr1:172454800-172455000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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