Variant report

Variant	rs2032531
Chromosome Location	chr1:172440579-172440580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172440495..172444630-chr1:172497465..172500697,4	MCF-7	breast:
2	chr1:172435653..172437888-chr1:172440470..172444240,3	MCF-7	breast:
3	chr1:172423456..172425141-chr1:172439304..172441807,2	MCF-7	breast:
4	chr1:172439490..172443248-chr1:172495023..172498932,4	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2001131	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2051628	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2157451	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2213739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2230471	0.93[EUR][1000 genomes]
rs2422142	0.88[EUR][1000 genomes]
rs4916259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6659116	0.85[EUR][1000 genomes]
rs6667786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6683444	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6700880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs916365	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425610	0.81[EUR][1000 genomes]
rs9425618	0.92[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172435800-172441800	Weak transcription	K562	blood
2	chr1:172436800-172444200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:172437000-172440800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:172437000-172441200	Weak transcription	NHEK	skin
5	chr1:172437000-172441600	Weak transcription	HMEC	breast
6	chr1:172437000-172444400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:172437800-172445400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:172438200-172449200	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:172439000-172441000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:172439000-172444400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:172439200-172442600	Weak transcription	Placenta	Placenta
12	chr1:172439600-172440800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr1:172439600-172442800	Weak transcription	Stomach Mucosa	stomach
14	chr1:172439800-172440800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr1:172439800-172441000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr1:172439800-172442600	Weak transcription	Pancreas	Pancrea
17	chr1:172439800-172443400	Enhancers	HepG2	liver
18	chr1:172440000-172445400	Weak transcription	Fetal Intestine Small	intestine
19	chr1:172440200-172445200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:172440400-172442000	Enhancers	Placenta Amnion	Placenta Amnion
21	chr1:172440400-172442600	Enhancers	Primary neutrophils fromperipheralblood	blood

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