Variant report

Variant	rs2213739
Chromosome Location	chr1:172439280-172439281
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172419066..172420955-chr1:172437059..172439364,2	MCF-7	breast:
2	chr1:172435073..172439525-chr1:172499726..172502954,7	MCF-7	breast:
3	chr1:172420111..172423084-chr1:172435694..172439908,6	MCF-7	breast:
4	chr1:172438999..172439573-chr1:172499191..172499779,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180999	Chromatin interaction
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10752953	1.00[CEU][hapmap]
rs2001131	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2032531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2051628	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2157451	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2230471	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2422139	1.00[CEU][hapmap]
rs2422142	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs4916256	1.00[CEU][hapmap]
rs4916259	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6659116	0.85[EUR][1000 genomes]
rs6660051	1.00[CEU][hapmap]
rs6667786	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6683444	0.92[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6700880	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs916365	1.00[CEU][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425314	1.00[CEU][hapmap]
rs9425610	0.81[EUR][1000 genomes]
rs9425618	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172435800-172441800	Weak transcription	K562	blood
2	chr1:172436400-172440200	Weak transcription	Right Atrium	heart
3	chr1:172436800-172444200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:172437000-172439400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:172437000-172440800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:172437000-172441200	Weak transcription	NHEK	skin
7	chr1:172437000-172441600	Weak transcription	HMEC	breast
8	chr1:172437000-172444400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:172437800-172445400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:172438200-172449200	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:172438400-172439800	Enhancers	Fetal Intestine Large	intestine
12	chr1:172438800-172440000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr1:172438800-172440000	Enhancers	Fetal Intestine Small	intestine
14	chr1:172439000-172439400	Flanking Active TSS	HepG2	liver
15	chr1:172439000-172439400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr1:172439000-172439600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr1:172439000-172439600	Enhancers	A549	lung
18	chr1:172439000-172439800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr1:172439000-172439800	Enhancers	Liver	Liver
20	chr1:172439000-172441000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:172439000-172444400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:172439200-172439600	Weak transcription	Pancreas	Pancrea
23	chr1:172439200-172439600	Enhancers	Stomach Mucosa	stomach
24	chr1:172439200-172440400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr1:172439200-172442600	Weak transcription	Placenta	Placenta

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