Variant report

Variant	rs9425618
Chromosome Location	chr1:172414847-172414848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172410326..172414934-chr1:172499314..172504781,7	K562	blood:
2	chr1:172411064..172415256-chr1:172501216..172504781,6	K562	blood:
3	chr1:172411084..172422561-chr1:172496524..172504623,44	MCF-7	breast:
4	chr1:172412087..172424934-chr1:172497120..172505334,59	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10752953	1.00[CEU][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes]
rs2001131	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs2032531	0.92[EUR][1000 genomes]
rs2051628	0.94[CEU][hapmap];1.00[GIH][hapmap];0.82[TSI][hapmap];0.92[EUR][1000 genomes]
rs2157451	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2213739	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2230471	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2422139	1.00[CEU][hapmap];0.89[MEX][hapmap];0.83[AMR][1000 genomes]
rs2422142	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs4916185	0.83[MKK][hapmap]
rs4916255	0.85[MKK][hapmap]
rs4916256	1.00[CEU][hapmap]
rs4916259	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs6659116	0.80[EUR][1000 genomes]
rs6660051	1.00[CEU][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6667786	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs6683444	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs6700880	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs916365	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs9425314	1.00[CEU][hapmap]
rs9425610	0.83[EUR][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172413600-172415400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:172413600-172415400	Weak transcription	Pancreas	Pancrea
3	chr1:172413600-172415400	Weak transcription	Psoas Muscle	Psoas
4	chr1:172413600-172416400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:172413600-172416400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:172413600-172416400	Weak transcription	Fetal Intestine Small	intestine
7	chr1:172413600-172416400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr1:172413600-172416600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:172413600-172416600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr1:172413600-172416600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:172413600-172416600	Weak transcription	Stomach Mucosa	stomach
12	chr1:172413600-172417200	Weak transcription	NHEK	skin
13	chr1:172413600-172417600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:172413600-172417800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:172413600-172417800	Weak transcription	Placenta	Placenta
16	chr1:172413600-172418000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:172413600-172418000	Weak transcription	HSMMtube	muscle
18	chr1:172413600-172418000	Weak transcription	NH-A	brain
19	chr1:172413600-172418400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:172413600-172418600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:172413600-172418600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:172413600-172418600	Weak transcription	Esophagus	oesophagus
23	chr1:172413600-172418800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:172413600-172418800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:172413600-172418800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr1:172413600-172418800	Weak transcription	Lung	lung
27	chr1:172413600-172418800	Weak transcription	Small Intestine	intestine
28	chr1:172413600-172419000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr1:172413600-172419000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr1:172413600-172419000	Weak transcription	Fetal Thymus	thymus
31	chr1:172413600-172419000	Weak transcription	Right Ventricle	heart
32	chr1:172413600-172419200	Weak transcription	Fetal Heart	heart
33	chr1:172413600-172421800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr1:172413600-172421800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr1:172413800-172415400	Weak transcription	Fetal Muscle Leg	muscle
36	chr1:172413800-172415400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr1:172413800-172415400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr1:172413800-172416200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr1:172413800-172416200	Weak transcription	Fetal Intestine Large	intestine
40	chr1:172413800-172416200	Weak transcription	Hela-S3	cervix
41	chr1:172413800-172416400	Weak transcription	HMEC	breast
42	chr1:172413800-172416800	Weak transcription	Adipose Nuclei	Adipose
43	chr1:172413800-172417200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr1:172413800-172417800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr1:172413800-172417800	Weak transcription	Fetal Kidney	kidney
46	chr1:172413800-172418200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr1:172413800-172418200	Weak transcription	K562	blood
48	chr1:172413800-172418800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr1:172413800-172418800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr1:172413800-172418800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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