Variant report

Variant	rs4916185
Chromosome Location	chr1:172388441-172388442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172385755..172389106-chr1:172391207..172393719,3	K562	blood:
2	chr1:172375496..172379926-chr1:172385834..172389157,4	MCF-7	breast:
3	chr1:172381987..172384677-chr1:172388260..172389798,2	K562	blood:

Variant related genes	Relation type
ENSG00000135845	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10489286	1.00[ASN][1000 genomes]
rs1052256	1.00[ASN][1000 genomes]
rs10752953	1.00[ASN][1000 genomes]
rs1132148	1.00[ASN][1000 genomes]
rs12031216	1.00[ASN][1000 genomes]
rs17277932	1.00[ASN][1000 genomes]
rs17369011	1.00[ASN][1000 genomes]
rs2230471	0.83[MKK][hapmap]
rs2422139	1.00[ASN][1000 genomes]
rs4916255	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916256	1.00[ASN][1000 genomes]
rs56259646	1.00[ASN][1000 genomes]
rs56340136	1.00[ASN][1000 genomes]
rs61806074	1.00[ASN][1000 genomes]
rs61806089	1.00[ASN][1000 genomes]
rs61806090	1.00[ASN][1000 genomes]
rs61806091	1.00[ASN][1000 genomes]
rs6660051	1.00[ASN][1000 genomes]
rs6674018	1.00[ASN][1000 genomes]
rs9425307	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425309	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425314	1.00[ASN][1000 genomes]
rs9425315	1.00[ASN][1000 genomes]
rs9425610	1.00[ASN][1000 genomes]
rs9425618	0.83[MKK][hapmap]
rs978875	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172368400-172390800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:172373000-172390800	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:172373000-172390800	Weak transcription	Brain Substantia Nigra	brain
4	chr1:172373000-172411800	Weak transcription	Brain Angular Gyrus	brain
5	chr1:172382200-172390800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:172383000-172388600	Enhancers	NHEK	skin
7	chr1:172384400-172398400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:172385000-172391600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:172385800-172391000	Weak transcription	Fetal Lung	lung
10	chr1:172385800-172411000	Weak transcription	Fetal Stomach	stomach
11	chr1:172386000-172391200	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:172386800-172390800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:172386800-172390800	Weak transcription	Psoas Muscle	Psoas
14	chr1:172386800-172391200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:172387000-172389800	Weak transcription	Fetal Thymus	thymus
16	chr1:172387200-172390800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:172387200-172390800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:172387200-172392200	Enhancers	Primary T cells from cord blood	blood
19	chr1:172387400-172389800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:172387400-172390600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr1:172387400-172390600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:172387400-172391000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr1:172387600-172389800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr1:172387600-172392400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:172387600-172392400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:172388000-172388600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr1:172388000-172388800	Enhancers	HMEC	breast
28	chr1:172388400-172388800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:172388400-172389000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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