Variant report

Variant	rs978875
Chromosome Location	chr1:172374555-172374556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172368021..172370277-chr1:172372809..172374587,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10489286	1.00[ASN][1000 genomes]
rs1052256	1.00[ASN][1000 genomes]
rs10752953	1.00[ASN][1000 genomes]
rs1132148	1.00[ASN][1000 genomes]
rs12031216	1.00[ASN][1000 genomes]
rs17277932	1.00[ASN][1000 genomes]
rs17369011	1.00[ASN][1000 genomes]
rs2422139	1.00[ASN][1000 genomes]
rs4916185	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916255	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916256	1.00[ASN][1000 genomes]
rs56259646	1.00[ASN][1000 genomes]
rs56340136	1.00[ASN][1000 genomes]
rs61806074	1.00[ASN][1000 genomes]
rs61806089	1.00[ASN][1000 genomes]
rs61806090	1.00[ASN][1000 genomes]
rs61806091	1.00[ASN][1000 genomes]
rs6660051	1.00[ASW][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs6674018	1.00[ASN][1000 genomes]
rs9425307	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425309	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425314	1.00[ASN][1000 genomes]
rs9425315	1.00[ASN][1000 genomes]
rs9425610	1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172352400-172386400	Weak transcription	Psoas Muscle	Psoas
2	chr1:172368400-172390800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:172368600-172374800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:172368800-172376800	Weak transcription	Fetal Brain Male	brain
5	chr1:172369600-172377000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:172369600-172377600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:172369800-172375000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:172369800-172375000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:172370200-172385600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:172370600-172378200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:172370600-172378200	Weak transcription	Fetal Kidney	kidney
12	chr1:172372800-172381600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr1:172373000-172378200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:172373000-172378200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:172373000-172390800	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:172373000-172390800	Weak transcription	Brain Substantia Nigra	brain
17	chr1:172373000-172411800	Weak transcription	Brain Angular Gyrus	brain
18	chr1:172373200-172374800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:172373800-172374800	Weak transcription	NHDF-Ad	bronchial
20	chr1:172373800-172375000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:172374000-172375000	Weak transcription	Muscle Satellite Cultured Cells	--

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