The 2.0 version of rSNPBase

Variant report

Variant rs17277932
Chromosome Location chr1:172323134-172323135
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172313400-172327000 Weak transcription Aorta Aorta
2 chr1:172320800-172332800 Enhancers Fetal Intestine Small intestine
3 chr1:172321200-172323400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr1:172321200-172324200 Enhancers GM12878-XiMat blood
5 chr1:172321200-172325000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
6 chr1:172321200-172325000 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr1:172321200-172326400 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr1:172321200-172327000 Weak transcription Brain Inferior Temporal Lobe brain
9 chr1:172321200-172327200 Weak transcription Right Atrium heart
10 chr1:172321200-172329600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:172321400-172324000 Weak transcription Colon Smooth Muscle Colon
12 chr1:172321400-172324200 Enhancers Hela-S3 cervix
13 chr1:172321400-172325000 Weak transcription Rectal Smooth Muscle rectum
14 chr1:172321400-172325200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr1:172321400-172325600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr1:172321400-172326600 Weak transcription Brain Cingulate Gyrus brain
17 chr1:172321400-172327000 Weak transcription Duodenum Mucosa Duodenum
18 chr1:172321400-172327000 Weak transcription Small Intestine intestine
19 chr1:172321400-172327200 Weak transcription Ovary ovary
20 chr1:172321600-172325000 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr1:172321600-172327200 Weak transcription Fetal Heart heart
22 chr1:172322000-172323400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr1:172322000-172325200 Weak transcription HUVEC blood vessel
24 chr1:172322000-172325600 Weak transcription NHDF-Ad bronchial
25 chr1:172322000-172327000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr1:172322000-172327000 Weak transcription Fetal Stomach stomach
27 chr1:172322200-172323200 Weak transcription Primary T helper cells PMA-I stimulated --
28 chr1:172322200-172323200 Weak transcription Primary T helper cells fromperipheralblood blood
29 chr1:172322200-172323400 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr1:172322200-172323400 Weak transcription A549 lung
31 chr1:172322200-172323400 Weak transcription NH-A brain
32 chr1:172322200-172325200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr1:172322200-172325200 Weak transcription HSMM muscle
34 chr1:172322200-172325800 Weak transcription Fetal Lung lung
35 chr1:172322400-172323400 Weak transcription Stomach Mucosa stomach
36 chr1:172322400-172324800 Weak transcription Osteobl bone
37 chr1:172322400-172325000 Weak transcription Muscle Satellite Cultured Cells --
38 chr1:172322400-172325000 Weak transcription Fetal Kidney kidney
39 chr1:172322400-172325200 Weak transcription HMEC breast
40 chr1:172322400-172325400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr1:172322400-172325800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr1:172322400-172326000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr1:172322400-172326000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr1:172322400-172326400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:172322400-172327000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr1:172322400-172327000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr1:172322400-172327000 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr1:172322400-172327600 Weak transcription Placenta Amnion Placenta Amnion
49 chr1:172322400-172329600 Weak transcription Gastric stomach
50 chr1:172322400-172331000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015