The 2.0 version of rSNPBase

Variant report

Variant rs56259646
Chromosome Location chr1:172330739-172330740
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172320800-172332800 Enhancers Fetal Intestine Small intestine
2 chr1:172322400-172331000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr1:172323000-172333000 Enhancers Fetal Intestine Large intestine
4 chr1:172325600-172331000 Enhancers Fetal Adrenal Gland Adrenal Gland
5 chr1:172325800-172331400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
6 chr1:172326200-172330800 Enhancers Stomach Mucosa stomach
7 chr1:172326400-172331200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
8 chr1:172326600-172332200 Enhancers iPS-15b Cell Line embryonic stem cell
9 chr1:172327000-172331000 Enhancers Primary T killer naive cells fromperipheralblood blood
10 chr1:172327000-172331000 Enhancers Fetal Muscle Leg muscle
11 chr1:172327000-172331000 Enhancers Small Intestine intestine
12 chr1:172327000-172331200 Enhancers Primary B cells from peripheral blood blood
13 chr1:172327000-172331200 Enhancers Fetal Stomach stomach
14 chr1:172327200-172332200 Enhancers Brain Substantia Nigra brain
15 chr1:172327600-172331000 Enhancers Primary T helper cells fromperipheralblood blood
16 chr1:172327800-172330800 Enhancers Brain Anterior Caudate brain
17 chr1:172327800-172330800 Enhancers HepG2 liver
18 chr1:172328000-172330800 Enhancers Primary T cells from cord blood blood
19 chr1:172328000-172330800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
20 chr1:172328000-172332400 Enhancers Cortex derived primary cultured neurospheres brain
21 chr1:172328200-172330800 Enhancers Primary T cells fromperipheralblood blood
22 chr1:172328200-172331000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr1:172328200-172331000 Enhancers Primary T helper naive cells from peripheral blood blood
24 chr1:172328200-172331000 Enhancers Primary T killer memory cells from peripheral blood blood
25 chr1:172328200-172331200 Enhancers Primary T helper cells PMA-I stimulated --
26 chr1:172328400-172331000 Enhancers Brain Inferior Temporal Lobe brain
27 chr1:172328400-172331000 Enhancers HMEC breast
28 chr1:172328400-172331200 Enhancers Primary T helper 17 cells PMA-I stimulated --
29 chr1:172328400-172331400 Enhancers Fetal Lung lung
30 chr1:172328400-172331600 Weak transcription Brain Germinal Matrix brain
31 chr1:172328400-172334000 Weak transcription Aorta Aorta
32 chr1:172328600-172331000 Enhancers Brain Hippocampus Middle brain
33 chr1:172329000-172331000 Enhancers Rectal Mucosa Donor 31 rectum
34 chr1:172329000-172332000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
35 chr1:172329000-172332400 Weak transcription Fetal Brain Male brain
36 chr1:172329200-172331000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
37 chr1:172329200-172331200 Enhancers Fetal Kidney kidney
38 chr1:172329200-172334600 Weak transcription Primary hematopoietic stem cells blood
39 chr1:172329600-172330800 Enhancers Primary B cells from cord blood blood
40 chr1:172329600-172331200 Enhancers Spleen Spleen
41 chr1:172329800-172331000 Enhancers H9 Cell Line embryonic stem cell
42 chr1:172329800-172334000 Weak transcription Left Ventricle heart
43 chr1:172329800-172334000 Weak transcription Osteobl bone
44 chr1:172330000-172331000 Enhancers Sigmoid Colon Sigmoid Colon
45 chr1:172330000-172331200 Flanking Active TSS GM12878-XiMat blood
46 chr1:172330200-172331000 Enhancers H1 Cell Line embryonic stem cell
47 chr1:172330200-172331000 Enhancers Pancreas Pancrea
48 chr1:172330200-172331200 Enhancers iPS-18 Cell Line embryonic stem cell
49 chr1:172330200-172332200 Enhancers iPS-20b Cell Line embryonic stem cell
50 chr1:172330400-172331000 Enhancers ES-WA7 Cell Line embryonic stem cell

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Last update: Aug 31, 2015