Variant report

Variant	rs17277918
Chromosome Location	chr1:172322620-172322621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172315289..172319406-chr1:172322030..172325808,4	MCF-7	breast:
2	chr1:172322016..172323683-chr1:172323746..172325652,2	MCF-7	breast:
3	chr1:172319507..172323495-chr1:172324646..172327530,4	MCF-7	breast:
4	chr1:172305170..172307799-chr1:172321376..172323141,2	MCF-7	breast:
5	chr1:172318035..172320026-chr1:172322027..172324198,2	K562	blood:

Variant related genes	Relation type
ENSG00000252354	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10489286	0.95[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17368942	0.95[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17369011	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56259646	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56340136	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61806074	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61806089	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61806090	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6674018	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172313400-172327000	Weak transcription	Aorta	Aorta
2	chr1:172320800-172332800	Enhancers	Fetal Intestine Small	intestine
3	chr1:172321200-172323400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:172321200-172324200	Enhancers	GM12878-XiMat	blood
5	chr1:172321200-172325000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:172321200-172325000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr1:172321200-172326400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:172321200-172327000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:172321200-172327200	Weak transcription	Right Atrium	heart
10	chr1:172321200-172329600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:172321400-172323000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:172321400-172323000	Weak transcription	Fetal Intestine Large	intestine
13	chr1:172321400-172324000	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:172321400-172324200	Enhancers	Hela-S3	cervix
15	chr1:172321400-172325000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr1:172321400-172325200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:172321400-172325600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:172321400-172326600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr1:172321400-172327000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr1:172321400-172327000	Weak transcription	Small Intestine	intestine
21	chr1:172321400-172327200	Weak transcription	Ovary	ovary
22	chr1:172321600-172325000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr1:172321600-172327200	Weak transcription	Fetal Heart	heart
24	chr1:172322000-172323000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:172322000-172323400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:172322000-172325200	Weak transcription	HUVEC	blood vessel
27	chr1:172322000-172325600	Weak transcription	NHDF-Ad	bronchial
28	chr1:172322000-172327000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr1:172322000-172327000	Weak transcription	Fetal Stomach	stomach
30	chr1:172322200-172323200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr1:172322200-172323200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr1:172322200-172323400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr1:172322200-172323400	Weak transcription	A549	lung
34	chr1:172322200-172323400	Weak transcription	NH-A	brain
35	chr1:172322200-172325200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:172322200-172325200	Weak transcription	HSMM	muscle
37	chr1:172322200-172325800	Weak transcription	Fetal Lung	lung
38	chr1:172322400-172322800	Weak transcription	HSMMtube	muscle
39	chr1:172322400-172323400	Weak transcription	Stomach Mucosa	stomach
40	chr1:172322400-172324800	Weak transcription	Osteobl	bone
41	chr1:172322400-172325000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr1:172322400-172325000	Weak transcription	Fetal Kidney	kidney
43	chr1:172322400-172325200	Weak transcription	HMEC	breast
44	chr1:172322400-172325400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:172322400-172325800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr1:172322400-172326000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr1:172322400-172326000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr1:172322400-172326400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr1:172322400-172327000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr1:172322400-172327000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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