Variant report

Variant	rs17368942
Chromosome Location	chr1:172307678-172307679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10489286	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17277918	0.95[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17369011	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56259646	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56340136	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61806074	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61806089	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61806090	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6674018	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172275200-172309800	Weak transcription	Left Ventricle	heart
2	chr1:172304000-172312200	Weak transcription	Aorta	Aorta
3	chr1:172307400-172307800	Enhancers	Primary B cells from peripheral blood	blood
4	chr1:172307400-172307800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr1:172307400-172307800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:172307400-172308000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:172307400-172308000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:172307400-172308600	Flanking Active TSS	GM12878-XiMat	blood
9	chr1:172307600-172308000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr1:172307600-172308000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr1:172307600-172308000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:172307600-172308000	Enhancers	A549	lung
13	chr1:172307600-172312600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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