Variant report

Variant	rs61806074
Chromosome Location	chr1:172311199-172311200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172305176..172306846-chr1:172309311..172312069,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10489286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1052256	1.00[ASN][1000 genomes]
rs10752953	1.00[ASN][1000 genomes]
rs1132148	1.00[ASN][1000 genomes]
rs12031216	1.00[ASN][1000 genomes]
rs17277918	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17277932	1.00[ASN][1000 genomes]
rs17368942	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17369011	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422139	1.00[ASN][1000 genomes]
rs4916185	1.00[ASN][1000 genomes]
rs4916255	1.00[ASN][1000 genomes]
rs4916256	1.00[ASN][1000 genomes]
rs56259646	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56340136	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61806089	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61806090	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61806091	1.00[ASN][1000 genomes]
rs6660051	1.00[ASN][1000 genomes]
rs6674018	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425307	1.00[ASN][1000 genomes]
rs9425309	1.00[ASN][1000 genomes]
rs9425314	1.00[ASN][1000 genomes]
rs9425315	1.00[ASN][1000 genomes]
rs9425610	1.00[ASN][1000 genomes]
rs978875	1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172304000-172312200	Weak transcription	Aorta	Aorta
2	chr1:172307600-172312600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:172307800-172312200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr1:172307800-172312200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:172308000-172311800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:172308000-172312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:172308000-172312000	Weak transcription	A549	lung
8	chr1:172308000-172312200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:172308000-172312200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:172308000-172312400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:172308000-172313200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr1:172308600-172311400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:172309200-172313800	Enhancers	Primary B cells from peripheral blood	blood
14	chr1:172309800-172311200	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:172310200-172311200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr1:172310400-172311800	Weak transcription	Brain Substantia Nigra	brain
17	chr1:172310600-172313800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr1:172310800-172313600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr1:172311000-172311600	Flanking Active TSS	GM12878-XiMat	blood
20	chr1:172311000-172313200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:172311000-172313600	Enhancers	HUES48 Cell Line	embryonic stem cell

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