Variant report

Variant	rs6660051
Chromosome Location	chr1:172394201-172394202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172393155..172395518-chr1:172407211..172410436,4	K562	blood:
2	chr1:172393961..172396841-chr1:172398956..172400533,2	K562	blood:
3	chr1:172392921..172394733-chr1:172397695..172399642,2	K562	blood:
4	chr1:172393925..172397088-chr1:172412072..172414772,3	K562	blood:

Variant related genes	Relation type
ENSG00000180999	Chromatin interaction
ENSG00000135845	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10489286	1.00[ASN][1000 genomes]
rs1052256	1.00[ASN][1000 genomes]
rs10752953	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1132148	1.00[ASN][1000 genomes]
rs12031216	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17277932	1.00[ASN][1000 genomes]
rs17369011	1.00[ASN][1000 genomes]
rs2001131	0.92[CEU][hapmap]
rs2051628	0.94[CEU][hapmap]
rs2157451	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2213739	1.00[CEU][hapmap]
rs2230471	1.00[CEU][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2422139	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422142	0.82[CEU][hapmap]
rs4916185	1.00[ASN][1000 genomes]
rs4916255	1.00[ASW][hapmap];0.87[LWK][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4916256	1.00[CEU][hapmap];0.91[GIH][hapmap];0.86[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916259	0.94[CEU][hapmap]
rs56259646	1.00[ASN][1000 genomes]
rs56340136	1.00[ASN][1000 genomes]
rs61806074	1.00[ASN][1000 genomes]
rs61806089	1.00[ASN][1000 genomes]
rs61806090	1.00[ASN][1000 genomes]
rs61806091	1.00[ASN][1000 genomes]
rs6667786	0.82[CEU][hapmap]
rs6674018	1.00[ASN][1000 genomes]
rs6683444	0.93[CEU][hapmap]
rs6700880	0.94[CEU][hapmap]
rs916365	0.94[CEU][hapmap]
rs9425307	1.00[ASN][1000 genomes]
rs9425309	1.00[ASN][1000 genomes]
rs9425314	1.00[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425315	1.00[ASN][1000 genomes]
rs9425610	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425618	1.00[CEU][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs978875	1.00[ASW][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172373000-172411800	Weak transcription	Brain Angular Gyrus	brain
2	chr1:172384400-172398400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:172385800-172411000	Weak transcription	Fetal Stomach	stomach
4	chr1:172390400-172395600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:172390600-172395600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:172391000-172410600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:172391000-172412200	Weak transcription	HSMMtube	muscle
8	chr1:172391200-172395200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:172391200-172395400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:172391200-172395800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr1:172391200-172395800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr1:172391400-172395200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:172391400-172395200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:172391400-172395400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr1:172391400-172396000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr1:172391400-172398000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:172391400-172400800	Weak transcription	Pancreas	Pancrea
18	chr1:172391400-172409400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr1:172391600-172394600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:172391600-172394600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:172391600-172395200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr1:172391600-172395200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr1:172391600-172396000	Weak transcription	Fetal Thymus	thymus
24	chr1:172391800-172394600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr1:172391800-172396400	Weak transcription	Fetal Lung	lung
26	chr1:172391800-172411000	Weak transcription	Spleen	Spleen
27	chr1:172392000-172412200	Weak transcription	Right Ventricle	heart
28	chr1:172392200-172394600	Weak transcription	Primary T cells from cord blood	blood
29	chr1:172392200-172411000	Weak transcription	Left Ventricle	heart
30	chr1:172392400-172396200	Weak transcription	Right Atrium	heart
31	chr1:172392400-172400400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr1:172392400-172400800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:172392400-172401000	Weak transcription	Lung	lung
34	chr1:172392800-172400200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:172393000-172396800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr1:172393800-172394600	Enhancers	HepG2	liver
37	chr1:172394200-172396400	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links