Variant report

Variant	rs6667786
Chromosome Location	chr1:172436682-172436683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10752953	0.82[CEU][hapmap]
rs2001131	0.83[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2032531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2051628	0.87[CEU][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2157451	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2213739	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2230471	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs2422139	0.82[CEU][hapmap]
rs2422142	0.88[EUR][1000 genomes]
rs4916256	0.82[CEU][hapmap]
rs4916259	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6659116	0.85[EUR][1000 genomes]
rs6660051	0.82[CEU][hapmap]
rs6683444	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6700880	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs916365	0.88[CEU][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425314	0.82[CEU][hapmap]
rs9425610	0.81[EUR][1000 genomes]
rs9425618	0.82[CEU][hapmap];0.92[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172434600-172436800	Enhancers	Pancreas	Pancrea
2	chr1:172434600-172437000	Enhancers	HSMMtube	muscle
3	chr1:172435000-172437000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:172435200-172437000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:172435200-172437000	Enhancers	NHEK	skin
6	chr1:172435400-172436800	Enhancers	Fetal Intestine Small	intestine
7	chr1:172435400-172437000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:172435400-172437000	Enhancers	HMEC	breast
9	chr1:172435400-172439000	Enhancers	HepG2	liver
10	chr1:172435400-172439200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr1:172435600-172439200	Weak transcription	Left Ventricle	heart
12	chr1:172435800-172441800	Weak transcription	K562	blood
13	chr1:172436000-172436800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:172436000-172437400	Enhancers	Fetal Intestine Large	intestine
15	chr1:172436200-172438000	Enhancers	HSMM	muscle
16	chr1:172436400-172437200	Flanking Active TSS	A549	lung
17	chr1:172436400-172437600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:172436400-172437600	Weak transcription	Fetal Muscle Leg	muscle
19	chr1:172436400-172440200	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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