The 2.0 version of rSNPBase

Variant report

Variant rs1132148
Chromosome Location chr1:172363526-172363527
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172346600-172367400 Weak transcription Breast Myoepithelial Primary Cells Breast
2 chr1:172352400-172386400 Weak transcription Psoas Muscle Psoas
3 chr1:172353600-172366400 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:172354600-172364000 Weak transcription Fetal Brain Female brain
5 chr1:172355000-172363800 Weak transcription Lung lung
6 chr1:172355600-172364000 Weak transcription Fetal Brain Male brain
7 chr1:172356600-172367400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr1:172359800-172363600 Weak transcription Fetal Intestine Small intestine
9 chr1:172360000-172368200 Weak transcription HepG2 liver
10 chr1:172360200-172364200 Enhancers Fetal Kidney kidney
11 chr1:172360200-172368600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr1:172360200-172369200 Weak transcription Spleen Spleen
13 chr1:172360600-172369000 Weak transcription Fetal Muscle Trunk muscle
14 chr1:172360600-172369200 Weak transcription Small Intestine intestine
15 chr1:172360800-172365400 Enhancers Primary B cells from peripheral blood blood
16 chr1:172361000-172363600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr1:172361400-172368400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
18 chr1:172361600-172366600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr1:172361800-172364200 Enhancers Brain Angular Gyrus brain
20 chr1:172362000-172363600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
21 chr1:172362000-172364000 Enhancers Brain Substantia Nigra brain
22 chr1:172362000-172364000 Flanking Active TSS GM12878-XiMat blood
23 chr1:172362000-172364200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
24 chr1:172362000-172364200 Enhancers Brain Anterior Caudate brain
25 chr1:172362000-172364600 Enhancers Primary Natural Killer cells fromperipheralblood blood
26 chr1:172362200-172363800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:172362200-172364200 Enhancers Primary hematopoietic stem cells short term culture blood
28 chr1:172362400-172363800 Enhancers Fetal Heart heart
29 chr1:172362400-172364400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr1:172362400-172365000 Enhancers Primary T cells fromperipheralblood blood
31 chr1:172362400-172369200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr1:172362600-172363800 Enhancers HSMMtube muscle
33 chr1:172362600-172364200 Enhancers Duodenum Smooth Muscle Duodenum
34 chr1:172362600-172368200 Enhancers Brain Cingulate Gyrus brain
35 chr1:172362800-172363600 Weak transcription Fetal Thymus thymus
36 chr1:172362800-172363600 Weak transcription Right Ventricle heart
37 chr1:172362800-172363800 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
38 chr1:172362800-172367400 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr1:172362800-172368600 Weak transcription Left Ventricle heart
40 chr1:172363000-172364000 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
41 chr1:172363000-172364200 Flanking Active TSS Primary T cells from cord blood blood
42 chr1:172363200-172363600 Active TSS Primary B cells from cord blood blood
43 chr1:172363200-172363600 Flanking Active TSS Colon Smooth Muscle Colon
44 chr1:172363200-172363800 Flanking Active TSS Brain Inferior Temporal Lobe brain
45 chr1:172363200-172363800 Enhancers Rectal Mucosa Donor 31 rectum
46 chr1:172363200-172363800 Flanking Active TSS Stomach Smooth Muscle stomach
47 chr1:172363200-172364000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
48 chr1:172363200-172364000 Enhancers iPS-20b Cell Line embryonic stem cell
49 chr1:172363200-172364000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr1:172363200-172364000 Flanking Active TSS Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015