Variant report

Variant	rs16844586
Chromosome Location	chr3:136878533-136878534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56809373	0.94[AFR][1000 genomes]
rs58932787	0.94[AFR][1000 genomes]
rs59635657	0.94[AFR][1000 genomes]
rs60248893	0.89[AFR][1000 genomes]
rs6772885	1.00[AMR][1000 genomes]
rs6789910	0.89[AFR][1000 genomes]
rs72980774	1.00[AMR][1000 genomes]
rs72980780	0.94[AFR][1000 genomes]
rs72980785	0.89[AFR][1000 genomes]
rs72980788	0.89[AFR][1000 genomes]
rs72980795	0.92[AFR][1000 genomes]
rs72980802	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624927	0.94[AFR][1000 genomes]
rs7647637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524856	chr3:136693459-137190765	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1012111	chr3:136695367-137343430	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv829733	chr3:136820486-136946215	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136868000-136879400	Weak transcription	Esophagus	oesophagus
2	chr3:136876200-136881600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links