Variant report

Variant	rs72980802
Chromosome Location	chr3:136850235-136850236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16844586	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56809373	0.92[AFR][1000 genomes]
rs58932787	0.92[AFR][1000 genomes]
rs59635657	0.92[AFR][1000 genomes]
rs60248893	0.87[AFR][1000 genomes]
rs6772885	1.00[AMR][1000 genomes]
rs6789910	0.87[AFR][1000 genomes]
rs72980774	1.00[AMR][1000 genomes]
rs72980780	0.92[AFR][1000 genomes]
rs72980785	0.87[AFR][1000 genomes]
rs72980788	0.87[AFR][1000 genomes]
rs72980795	0.89[AFR][1000 genomes]
rs7624927	0.92[AFR][1000 genomes]
rs7647637	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524856	chr3:136693459-137190765	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1012111	chr3:136695367-137343430	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv829733	chr3:136820486-136946215	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136848600-136850600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:136848800-136850600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:136849200-136850600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr3:136849200-136850600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:136849200-136850800	Enhancers	Primary T cells from cord blood	blood
6	chr3:136849200-136850800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr3:136849400-136850400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:136849400-136850600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:136849600-136850400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:136849600-136850400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr3:136849600-136850600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:136849600-136850600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr3:136849600-136850800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr3:136849600-136850800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr3:136849600-136850800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr3:136849800-136850400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:136850000-136850600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr3:136850000-136850600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr3:136850200-136850600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr3:136850200-136850600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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