Variant report

Variant	rs72980780
Chromosome Location	chr3:136830538-136830539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16844586	0.94[AFR][1000 genomes]
rs56809373	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58932787	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59635657	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60248893	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6789910	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72980777	1.00[AMR][1000 genomes]
rs72980785	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72980788	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72980789	1.00[AMR][1000 genomes]
rs72980795	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72980802	0.92[AFR][1000 genomes]
rs7624927	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7647637	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524856	chr3:136693459-137190765	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1012111	chr3:136695367-137343430	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv829733	chr3:136820486-136946215	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136828400-136840600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:136828600-136840400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:136829600-136831000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:136830200-136831000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:136830400-136830600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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