Variant report

Variant	rs16845043
Chromosome Location	chr1:172854017-172854018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172852617..172854204-chr1:172854324..172855885,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227177	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10912521	1.00[EUR][1000 genomes]
rs13375250	1.00[EUR][1000 genomes]
rs13375545	1.00[EUR][1000 genomes]
rs16845066	1.00[EUR][1000 genomes]
rs2206374	1.00[EUR][1000 genomes]
rs35344763	1.00[EUR][1000 genomes]
rs56962913	1.00[EUR][1000 genomes]
rs58852323	1.00[EUR][1000 genomes]
rs60924937	1.00[EUR][1000 genomes]
rs6662600	1.00[EUR][1000 genomes]
rs74128727	1.00[EUR][1000 genomes]
rs74128728	1.00[EUR][1000 genomes]
rs74128729	1.00[EUR][1000 genomes]
rs74128735	1.00[EUR][1000 genomes]
rs7521017	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172840600-172855200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172850600-172856800	Enhancers	HUVEC	blood vessel
3	chr1:172852000-172855600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:172852000-172855600	Enhancers	HSMM	muscle
5	chr1:172852200-172854800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr1:172852200-172855200	Enhancers	HSMMtube	muscle
7	chr1:172852200-172855400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:172852200-172855400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:172852200-172855600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:172852400-172854200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:172852400-172855800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:172852600-172862400	Weak transcription	Pancreas	Pancrea
13	chr1:172852800-172854600	Weak transcription	Right Atrium	heart
14	chr1:172852800-172857000	Enhancers	Stomach Mucosa	stomach
15	chr1:172853200-172854200	Enhancers	Dnd41	blood
16	chr1:172853200-172854200	Weak transcription	NHDF-Ad	bronchial
17	chr1:172853200-172854600	Weak transcription	NHLF	lung
18	chr1:172853200-172855600	Enhancers	Osteobl	bone
19	chr1:172853400-172854600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:172853400-172855200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr1:172853400-172855200	Weak transcription	NH-A	brain
22	chr1:172853600-172854400	Weak transcription	Psoas Muscle	Psoas
23	chr1:172854000-172854800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:172854000-172855400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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