Variant report

Variant	rs60924937
Chromosome Location	chr1:172928272-172928273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10912521	1.00[EUR][1000 genomes]
rs13375250	1.00[EUR][1000 genomes]
rs13375545	1.00[EUR][1000 genomes]
rs16845043	1.00[EUR][1000 genomes]
rs16845066	1.00[EUR][1000 genomes]
rs2206374	1.00[EUR][1000 genomes]
rs35344763	1.00[EUR][1000 genomes]
rs56962913	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6662600	1.00[EUR][1000 genomes]
rs74128727	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128728	1.00[EUR][1000 genomes]
rs74128729	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7521017	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172918000-172929000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:172921600-172929600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:172924800-172929400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:172925000-172929000	Weak transcription	Osteobl	bone
5	chr1:172925000-172929400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:172925000-172929400	Weak transcription	NHEK	skin
7	chr1:172925200-172929000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:172925200-172929000	Weak transcription	Fetal Stomach	stomach
9	chr1:172925200-172929200	Weak transcription	NH-A	brain
10	chr1:172925400-172928600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:172925400-172928800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:172925400-172929000	Weak transcription	NHLF	lung
13	chr1:172925400-172929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:172925800-172929000	Weak transcription	NHDF-Ad	bronchial
15	chr1:172926000-172928800	Weak transcription	HSMMtube	muscle
16	chr1:172926000-172929000	Weak transcription	HSMM	muscle
17	chr1:172926200-172928800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:172927200-172928800	Weak transcription	HUVEC	blood vessel
19	chr1:172928000-172929400	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr1:172928000-172930000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr1:172928200-172928800	Enhancers	Fetal Intestine Large	intestine

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