The 2.0 version of rSNPBase

Variant report

Variant rs56962913
Chromosome Location chr1:172868219-172868220
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172864800-172870000 Enhancers HUVEC blood vessel
2 chr1:172865000-172868600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr1:172865000-172871200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr1:172865200-172868400 Weak transcription Primary hematopoietic stem cells blood
5 chr1:172865200-172868400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr1:172865200-172868600 Weak transcription Primary B cells from peripheral blood blood
7 chr1:172865200-172868800 Weak transcription Primary B cells from cord blood blood
8 chr1:172865200-172870400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
9 chr1:172865200-172870400 Weak transcription HSMMtube muscle
10 chr1:172865200-172871400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr1:172865200-172872200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:172865200-172872200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr1:172865200-172875200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr1:172865400-172869600 Weak transcription Dnd41 blood
15 chr1:172865600-172868400 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr1:172865600-172869400 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr1:172865600-172869600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr1:172865600-172869600 Weak transcription Primary T helper naive cells fromperipheralblood blood
19 chr1:172865600-172869600 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr1:172865600-172874600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr1:172865800-172875200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr1:172865800-172878400 Weak transcription Placenta Amnion Placenta Amnion
23 chr1:172866600-172868600 Enhancers Muscle Satellite Cultured Cells --
24 chr1:172866600-172868600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
25 chr1:172866600-172868800 Enhancers Osteobl bone
26 chr1:172866800-172868400 Enhancers HSMM muscle
27 chr1:172867000-172868600 Enhancers NHLF lung
28 chr1:172867000-172868800 Enhancers NH-A brain
29 chr1:172867200-172871600 Weak transcription NHEK skin
30 chr1:172867200-172872200 Weak transcription HMEC breast
31 chr1:172867400-172868800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr1:172867400-172871400 Weak transcription Hela-S3 cervix
33 chr1:172867800-172871400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:172868000-172868600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
35 chr1:172868000-172869600 Enhancers Primary hematopoietic stem cells short term culture blood
36 chr1:172868000-172870400 Enhancers Primary T cells from cord blood blood
37 chr1:172868200-172868400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr1:172868200-172868400 Enhancers NHDF-Ad bronchial
39 chr1:172868200-172868600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
40 chr1:172868200-172869600 Weak transcription Primary T killer naive cells fromperipheralblood blood
41 chr1:172868200-172870400 Enhancers Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015