Variant report

Variant	rs16845717
Chromosome Location	chr2:212116781-212116782
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10193167	1.00[AMR][1000 genomes]
rs10804190	1.00[AMR][1000 genomes]
rs10804191	1.00[AMR][1000 genomes]
rs16845315	1.00[AMR][1000 genomes]
rs16845355	1.00[AMR][1000 genomes]
rs16845357	1.00[AMR][1000 genomes]
rs16845363	1.00[AMR][1000 genomes]
rs16845417	1.00[AMR][1000 genomes]
rs16845560	1.00[AMR][1000 genomes]
rs16845666	1.00[AMR][1000 genomes]
rs16846111	1.00[AMR][1000 genomes]
rs16846114	1.00[AMR][1000 genomes]
rs1821823	1.00[AMR][1000 genomes]
rs4584965	1.00[AMR][1000 genomes]
rs56690527	1.00[AMR][1000 genomes]
rs58471578	1.00[AMR][1000 genomes]
rs58556507	1.00[AMR][1000 genomes]
rs59249276	1.00[AMR][1000 genomes]
rs60053373	1.00[AMR][1000 genomes]
rs60267396	1.00[AMR][1000 genomes]
rs60893637	1.00[AMR][1000 genomes]
rs6746210	1.00[AMR][1000 genomes]
rs7559816	1.00[AMR][1000 genomes]
rs7598810	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834522	chr2:212066442-212225328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212114400-212117200	Weak transcription	Liver	Liver
2	chr2:212115000-212116800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:212115600-212116800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:212116400-212116800	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links