Variant report

Variant	rs7559816
Chromosome Location	chr2:212010187-212010188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10193167	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10497943	1.00[AMR][1000 genomes]
rs10804190	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10804191	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16845315	1.00[AMR][1000 genomes]
rs16845355	1.00[AMR][1000 genomes]
rs16845357	1.00[AMR][1000 genomes]
rs16845363	1.00[AMR][1000 genomes]
rs16845417	1.00[AMR][1000 genomes]
rs16845560	1.00[AMR][1000 genomes]
rs16845666	1.00[AMR][1000 genomes]
rs16845717	1.00[AMR][1000 genomes]
rs1821823	1.00[AMR][1000 genomes]
rs4584965	1.00[AMR][1000 genomes]
rs56690527	1.00[AMR][1000 genomes]
rs58471578	1.00[AMR][1000 genomes]
rs58556507	1.00[AMR][1000 genomes]
rs59226190	1.00[AMR][1000 genomes]
rs59249276	1.00[AMR][1000 genomes]
rs59998652	0.92[AFR][1000 genomes]
rs60053373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60267396	1.00[AMR][1000 genomes]
rs60893637	1.00[AMR][1000 genomes]
rs6746210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7598810	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875773	chr2:211973600-212041403	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212008000-212010800	Enhancers	Hela-S3	cervix
2	chr2:212008600-212010200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:212009800-212011400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:212010000-212010200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:212010000-212011800	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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