Variant report
| Variant | rs59226190 |
|---|---|
| Chromosome Location | chr2:211926024-211926025 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:211918949..211922416-chr2:211922605..211926396,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10193167 | 1.00[AMR][1000 genomes] |
| rs10497943 | 1.00[AMR][1000 genomes] |
| rs10804190 | 1.00[AMR][1000 genomes] |
| rs10804191 | 1.00[AMR][1000 genomes] |
| rs16845315 | 1.00[AMR][1000 genomes] |
| rs16845355 | 1.00[AMR][1000 genomes] |
| rs16845357 | 1.00[AMR][1000 genomes] |
| rs16845363 | 1.00[AMR][1000 genomes] |
| rs16845417 | 1.00[AMR][1000 genomes] |
| rs16845560 | 1.00[AMR][1000 genomes] |
| rs1821823 | 1.00[AMR][1000 genomes] |
| rs4584965 | 1.00[AMR][1000 genomes] |
| rs56690527 | 1.00[AMR][1000 genomes] |
| rs58471578 | 1.00[AMR][1000 genomes] |
| rs58556507 | 1.00[AMR][1000 genomes] |
| rs60053373 | 1.00[AMR][1000 genomes] |
| rs60267396 | 1.00[AMR][1000 genomes] |
| rs60893637 | 1.00[AMR][1000 genomes] |
| rs6746210 | 1.00[AMR][1000 genomes] |
| rs7559816 | 1.00[AMR][1000 genomes] |
| rs7598810 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012193 | chr2:211684524-212072213 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv875772 | chr2:211893388-211946057 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv834521 | chr2:211918881-212057872 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv963972 | chr2:211922680-211928471 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:211925400-211926400 | Weak transcription | Fetal Intestine Large | intestine |
| 2 | chr2:211925600-211926600 | Enhancers | Fetal Intestine Small | intestine |
