Variant report
| Variant | rs16845560 |
|---|---|
| Chromosome Location | chr2:212069353-212069354 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:212055110..212056655-chr2:212069046..212071730,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10193167 | 1.00[AMR][1000 genomes] |
| rs10497943 | 1.00[AMR][1000 genomes] |
| rs10804190 | 1.00[AMR][1000 genomes] |
| rs10804191 | 1.00[AMR][1000 genomes] |
| rs16845315 | 1.00[AMR][1000 genomes] |
| rs16845355 | 1.00[AMR][1000 genomes] |
| rs16845357 | 1.00[AMR][1000 genomes] |
| rs16845363 | 1.00[AMR][1000 genomes] |
| rs16845417 | 1.00[AMR][1000 genomes] |
| rs16845666 | 1.00[AMR][1000 genomes] |
| rs16845717 | 1.00[AMR][1000 genomes] |
| rs1821823 | 1.00[AMR][1000 genomes] |
| rs4584965 | 1.00[AMR][1000 genomes] |
| rs56690527 | 1.00[AMR][1000 genomes] |
| rs58471578 | 1.00[AMR][1000 genomes] |
| rs58556507 | 1.00[AMR][1000 genomes] |
| rs59226190 | 1.00[AMR][1000 genomes] |
| rs59249276 | 1.00[AMR][1000 genomes] |
| rs60053373 | 1.00[AMR][1000 genomes] |
| rs60267396 | 1.00[AMR][1000 genomes] |
| rs60893637 | 1.00[AMR][1000 genomes] |
| rs6746210 | 1.00[AMR][1000 genomes] |
| rs7559816 | 1.00[AMR][1000 genomes] |
| rs7598810 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012193 | chr2:211684524-212072213 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv460064 | chr2:212045919-212101698 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv470511 | chr2:212045919-212101698 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv584312 | chr2:212045919-212101698 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv834522 | chr2:212066442-212225328 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:212068600-212069400 | Enhancers | HSMMtube | muscle |
| 2 | chr2:212069200-212069600 | Flanking Active TSS | Hela-S3 | cervix |
