Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16848665	1.00[AMR][1000 genomes]
rs16848675	0.86[YRI][hapmap];0.88[AFR][1000 genomes]
rs16848684	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16848687	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61240706	1.00[AMR][1000 genomes]
rs73063111	1.00[AMR][1000 genomes]
rs73063145	1.00[AMR][1000 genomes]
rs73063178	1.00[AMR][1000 genomes]
rs73063185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73063189	0.93[AFR][1000 genomes]
rs73067068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73067070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73067072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73067074	0.85[AFR][1000 genomes]
rs73067077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73067081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73067085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069027	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069029	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069031	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069033	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213352200-213354200	Enhancers	Fetal Heart	heart
2	chr2:213352400-213354000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr2:213353000-213354000	Enhancers	Brain Substantia Nigra	brain
4	chr2:213353400-213356200	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:213353400-213362200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:213353800-213356600	Weak transcription	Brain Angular Gyrus	brain

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