Variant report

Variant	rs73069027
Chromosome Location	chr2:213367511-213367512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16848665	1.00[AMR][1000 genomes]
rs16848675	0.84[AFR][1000 genomes]
rs16848684	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16848687	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16848694	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61240706	1.00[AMR][1000 genomes]
rs73063111	1.00[AMR][1000 genomes]
rs73063145	1.00[AMR][1000 genomes]
rs73063178	1.00[AMR][1000 genomes]
rs73063185	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73063189	0.89[AFR][1000 genomes]
rs73067068	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73067070	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73067072	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73067074	0.82[AFR][1000 genomes]
rs73067077	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73067081	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73067085	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069033	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1008463	chr2:213356335-213388695	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv584423	chr2:213367273-213370734	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213366200-213368400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:213366400-213370000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:213367200-213367600	Enhancers	Brain Substantia Nigra	brain
4	chr2:213367400-213367800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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