Variant report

Variant	rs73063178
Chromosome Location	chr2:213349429-213349430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16848561	0.95[AFR][1000 genomes]
rs16848665	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16848684	1.00[AMR][1000 genomes]
rs16848687	1.00[AMR][1000 genomes]
rs16848694	1.00[AMR][1000 genomes]
rs61240706	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73063111	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73063145	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73063185	1.00[AMR][1000 genomes]
rs73067068	1.00[AMR][1000 genomes]
rs73067070	1.00[AMR][1000 genomes]
rs73067072	1.00[AMR][1000 genomes]
rs73067077	1.00[AMR][1000 genomes]
rs73067081	1.00[AMR][1000 genomes]
rs73067085	1.00[AMR][1000 genomes]
rs73069027	1.00[AMR][1000 genomes]
rs73069029	1.00[AMR][1000 genomes]
rs73069031	1.00[AMR][1000 genomes]
rs73069033	1.00[AMR][1000 genomes]
rs73079462	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213345600-213350600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:213346800-213349600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:213346800-213352400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:213347000-213350000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:213347400-213349600	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:213349200-213352400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:213349400-213349800	Enhancers	Aorta	Aorta
8	chr2:213349400-213350400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:213349400-213350800	Enhancers	Brain Anterior Caudate	brain
10	chr2:213349400-213350800	Enhancers	Fetal Heart	heart
11	chr2:213349400-213351400	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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