Variant report

Variant	rs16851064
Chromosome Location	chr3:140833975-140833976
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140832996..140835828-chr3:140869146..140871657,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TFDP2-3	chr3:140833966-140834178	ENSG00000251270.1

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12496637	1.00[AFR][1000 genomes]
rs12631984	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1426956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16851066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683555	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4683562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73871713	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73872041	0.93[ASN][1000 genomes]
rs73872044	0.93[ASN][1000 genomes]
rs73872048	0.93[ASN][1000 genomes]
rs73872053	0.88[ASN][1000 genomes]
rs73872056	0.93[ASN][1000 genomes]
rs7433008	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs922475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs922476	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140823800-140846800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:140828200-140835000	Weak transcription	Fetal Kidney	kidney
3	chr3:140829000-140835000	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:140829400-140841400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:140829600-140836200	Enhancers	Fetal Muscle Leg	muscle
6	chr3:140829800-140835000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:140831200-140834800	Weak transcription	Dnd41	blood
8	chr3:140831400-140835800	Enhancers	Fetal Heart	heart
9	chr3:140831800-140835000	Weak transcription	Fetal Thymus	thymus
10	chr3:140832400-140835200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:140832400-140840400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:140832400-140845200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:140832600-140836200	Enhancers	Fetal Muscle Trunk	muscle
14	chr3:140833000-140836000	Enhancers	Fetal Stomach	stomach
15	chr3:140833200-140834200	Enhancers	Pancreas	Pancrea
16	chr3:140833200-140834200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr3:140833200-140834400	Enhancers	Left Ventricle	heart
18	chr3:140833200-140834400	Enhancers	Right Atrium	heart
19	chr3:140833400-140835600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr3:140833400-140835800	Enhancers	Adipose Nuclei	Adipose
21	chr3:140833400-140836200	Enhancers	Ovary	ovary
22	chr3:140833600-140835200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:140833600-140835400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr3:140833600-140836000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:140833600-140836200	Enhancers	Fetal Lung	lung
26	chr3:140833800-140834000	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr3:140833800-140834000	Enhancers	Hela-S3	cervix
28	chr3:140833800-140834000	Enhancers	HSMM	muscle
29	chr3:140833800-140834200	Enhancers	Right Ventricle	heart
30	chr3:140833800-140835600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:140833800-140836000	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links