Variant report

Variant	rs922476
Chromosome Location	chr3:140843242-140843243
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12496637	1.00[AFR][1000 genomes]
rs12631984	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1426956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16851064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16851066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683555	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4683562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73871713	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73872041	0.93[ASN][1000 genomes]
rs73872044	0.93[ASN][1000 genomes]
rs73872048	0.93[ASN][1000 genomes]
rs73872053	0.88[ASN][1000 genomes]
rs73872056	0.93[ASN][1000 genomes]
rs7433008	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs922475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140823800-140846800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:140832400-140845200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:140841400-140843800	Enhancers	Left Ventricle	heart
4	chr3:140841400-140846600	Enhancers	Pancreas	Pancrea
5	chr3:140841800-140843400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:140841800-140845000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:140841800-140846000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:140841800-140846000	Weak transcription	Dnd41	blood
9	chr3:140841800-140846200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:140841800-140846400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:140842000-140845200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:140842400-140843400	Enhancers	Fetal Muscle Leg	muscle
13	chr3:140842400-140843600	Enhancers	Right Ventricle	heart
14	chr3:140842600-140843400	Enhancers	Psoas Muscle	Psoas
15	chr3:140842600-140843800	Enhancers	Right Atrium	heart
16	chr3:140842800-140843400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:140843200-140843400	Enhancers	Brain Substantia Nigra	brain
18	chr3:140843200-140843800	Enhancers	Fetal Heart	heart
19	chr3:140843200-140844000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr3:140843200-140844400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:140843200-140844400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr3:140843200-140845000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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