Variant report

Variant	rs16851503
Chromosome Location	chr3:105433745-105433746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105429146..105430827-chr3:105431044..105433948,2	K562	blood:
2	chr3:105431222..105434203-chr3:105434765..105437080,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11914309	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851593	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57757681	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58848921	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877306	chr3:105372196-105495841	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv877307	chr3:105373836-105465189	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv591242	chr3:105373836-105470134	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877308	chr3:105373836-105495841	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877310	chr3:105409321-105495841	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105375800-105464600	Weak transcription	Small Intestine	intestine
2	chr3:105376000-105438200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:105376800-105440000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:105378000-105455400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:105378600-105438600	Weak transcription	Spleen	Spleen
6	chr3:105379000-105437400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:105379200-105440400	Weak transcription	Thymus	Thymus
8	chr3:105389200-105467200	Weak transcription	Stomach Mucosa	stomach
9	chr3:105394200-105438800	Weak transcription	NHEK	skin
10	chr3:105396000-105437200	Weak transcription	Psoas Muscle	Psoas
11	chr3:105396000-105437400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:105396000-105438200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:105396000-105438400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:105400000-105437200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:105401600-105433800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:105405200-105437200	Weak transcription	NHLF	lung
17	chr3:105407800-105457800	Weak transcription	HepG2	liver
18	chr3:105408400-105440400	Weak transcription	A549	lung
19	chr3:105409000-105441600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:105410800-105437600	Weak transcription	Fetal Heart	heart
21	chr3:105412000-105434000	Weak transcription	HMEC	breast
22	chr3:105412400-105437200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:105412400-105441600	Weak transcription	Brain Substantia Nigra	brain
24	chr3:105412600-105437400	Weak transcription	Dnd41	blood
25	chr3:105415600-105438000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr3:105417200-105436800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:105417400-105443400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:105419200-105439200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:105420800-105445600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:105421200-105436400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr3:105421200-105436600	Weak transcription	Brain Germinal Matrix	brain
32	chr3:105421200-105437000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr3:105421200-105437200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr3:105421200-105437200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr3:105421200-105437400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr3:105421200-105437600	Weak transcription	Brain Anterior Caudate	brain
37	chr3:105421200-105438000	Weak transcription	Aorta	Aorta
38	chr3:105421200-105438200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr3:105421200-105438800	Weak transcription	Esophagus	oesophagus
40	chr3:105421200-105441800	Weak transcription	Brain Hippocampus Middle	brain
41	chr3:105421200-105465400	Weak transcription	Colonic Mucosa	Colon
42	chr3:105421400-105436800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr3:105421400-105436800	Weak transcription	Ovary	ovary
44	chr3:105421400-105437400	Weak transcription	Brain Angular Gyrus	brain
45	chr3:105421400-105437400	Weak transcription	Colon Smooth Muscle	Colon
46	chr3:105421400-105438000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr3:105421400-105443000	Weak transcription	Fetal Intestine Small	intestine
48	chr3:105421600-105437200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr3:105422000-105441400	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr3:105422600-105437200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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