Variant report

Variant	rs11914309
Chromosome Location	chr3:105530807-105530808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105529832..105533992-chr3:105585756..105590627,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114423	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11926864	1.00[AMR][1000 genomes]
rs16851436	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851503	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2655051	1.00[AMR][1000 genomes]
rs340076	1.00[AMR][1000 genomes]
rs340077	1.00[AMR][1000 genomes]
rs57437357	0.87[AFR][1000 genomes]
rs57757681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58848921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105483200-105555200	Weak transcription	Placenta	Placenta
2	chr3:105505000-105548200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:105511400-105566400	Weak transcription	Aorta	Aorta
4	chr3:105512200-105534200	Weak transcription	Left Ventricle	heart
5	chr3:105515400-105539000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:105519200-105541600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:105520800-105531400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:105521200-105531200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr3:105521200-105536000	Weak transcription	Right Ventricle	heart
10	chr3:105521200-105546800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:105521400-105541200	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:105521400-105542000	Weak transcription	Fetal Stomach	stomach
13	chr3:105522400-105533800	Weak transcription	Brain Germinal Matrix	brain
14	chr3:105522400-105541200	Weak transcription	Primary T cells from cord blood	blood
15	chr3:105524200-105532200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr3:105524600-105541600	Weak transcription	Right Atrium	heart
17	chr3:105525600-105540200	Weak transcription	NHLF	lung
18	chr3:105525800-105531200	Weak transcription	HSMM	muscle
19	chr3:105526000-105531000	Weak transcription	HUVEC	blood vessel
20	chr3:105526200-105534000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr3:105526200-105541600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr3:105526200-105542400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:105526400-105531000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:105527600-105537800	Weak transcription	Primary B cells from cord blood	blood
25	chr3:105527800-105533600	Enhancers	Osteobl	bone
26	chr3:105528400-105531200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:105528400-105541600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr3:105528400-105542000	Weak transcription	Pancreas	Pancrea
29	chr3:105528400-105543200	Weak transcription	Gastric	stomach
30	chr3:105528400-105553600	Weak transcription	Fetal Kidney	kidney
31	chr3:105528600-105531200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:105528600-105542600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr3:105528800-105531200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:105528800-105531600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:105528800-105531600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:105528800-105536600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr3:105528800-105539000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr3:105528800-105539000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:105528800-105540000	Weak transcription	Fetal Heart	heart
40	chr3:105528800-105540200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr3:105528800-105541600	Weak transcription	Brain Hippocampus Middle	brain
42	chr3:105529000-105531200	Weak transcription	Fetal Intestine Large	intestine
43	chr3:105529000-105531400	Weak transcription	Fetal Intestine Small	intestine
44	chr3:105529000-105532600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:105529000-105540000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr3:105529000-105541600	Weak transcription	Fetal Lung	lung
47	chr3:105529000-105541800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:105529000-105542200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr3:105529000-105546600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr3:105529400-105531200	Weak transcription	Liver	Liver

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