Variant report

Variant	rs57437357
Chromosome Location	chr3:105482494-105482495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105481713..105484437-chr7:147483253..147485905,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11914309	0.87[AFR][1000 genomes]
rs16851593	0.87[AFR][1000 genomes]
rs57757681	0.87[AFR][1000 genomes]
rs58848921	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877306	chr3:105372196-105495841	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv877308	chr3:105373836-105495841	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877310	chr3:105409321-105495841	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv591244	chr3:105438320-105495841	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv591246	chr3:105439522-105504129	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv877311	chr3:105449986-105493286	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105464800-105482600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:105465800-105483400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:105467600-105509400	Weak transcription	Stomach Mucosa	stomach
4	chr3:105472200-105499000	Weak transcription	NHDF-Ad	bronchial
5	chr3:105472400-105504400	Weak transcription	HUVEC	blood vessel
6	chr3:105474600-105483200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:105475200-105483000	Strong transcription	Osteobl	bone
8	chr3:105475200-105485600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:105475800-105483000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:105476000-105486600	Weak transcription	Psoas Muscle	Psoas
11	chr3:105477600-105482800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:105477800-105486800	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:105478200-105495400	Weak transcription	HSMMtube	muscle
14	chr3:105478600-105486600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:105478600-105509400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr3:105478600-105511200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:105478800-105482600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:105478800-105483400	Weak transcription	Right Ventricle	heart
19	chr3:105478800-105489200	Weak transcription	Right Atrium	heart
20	chr3:105478800-105496200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:105479000-105482600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:105479800-105482800	ZNF genes & repeats	Fetal Intestine Small	intestine
23	chr3:105479800-105483000	ZNF genes & repeats	GM12878-XiMat	blood
24	chr3:105479800-105483400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:105479800-105483800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:105480200-105482800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:105480400-105482600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:105480400-105482800	ZNF genes & repeats	Fetal Intestine Large	intestine
29	chr3:105480400-105483800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:105480400-105484800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:105480600-105482800	ZNF genes & repeats	Fetal Muscle Leg	muscle
32	chr3:105480600-105483400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
33	chr3:105480600-105484800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:105480800-105482600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
35	chr3:105480800-105482800	Strong transcription	Primary T cells from cord blood	blood
36	chr3:105481000-105482800	ZNF genes & repeats	Fetal Lung	lung
37	chr3:105481200-105483000	Strong transcription	Fetal Kidney	kidney
38	chr3:105481200-105500800	Weak transcription	Small Intestine	intestine
39	chr3:105481400-105482800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr3:105481400-105482800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
41	chr3:105481400-105483400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:105481400-105491600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr3:105481400-105509600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr3:105481600-105483200	Weak transcription	Brain Substantia Nigra	brain
45	chr3:105481600-105485200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr3:105481600-105486600	Weak transcription	Adipose Nuclei	Adipose
47	chr3:105481600-105486600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr3:105481600-105498000	Weak transcription	NH-A	brain
49	chr3:105481800-105482600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr3:105481800-105482600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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