Variant report

Variant	rs16851557
Chromosome Location	chr3:105464553-105464554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105452868..105454661-chr3:105463117..105465166,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs16851398	1.00[AMR][1000 genomes]
rs16851409	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851417	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851429	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851434	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851455	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851457	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851521	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851530	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851542	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35835913	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55804660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56323302	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56405245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60520841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72993723	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72995636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72995638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72995651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72995660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72995662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72995690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72995701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72995702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72997617	1.00[AFR][1000 genomes]
rs72997628	1.00[AMR][1000 genomes]
rs7612706	1.00[AMR][1000 genomes]
rs7634544	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877306	chr3:105372196-105495841	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv877307	chr3:105373836-105465189	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv591242	chr3:105373836-105470134	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877308	chr3:105373836-105495841	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877310	chr3:105409321-105495841	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv591243	chr3:105438320-105470134	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv591244	chr3:105438320-105495841	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv591245	chr3:105438806-105469882	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv591246	chr3:105439522-105504129	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv877311	chr3:105449986-105493286	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105375800-105464600	Weak transcription	Small Intestine	intestine
2	chr3:105389200-105467200	Weak transcription	Stomach Mucosa	stomach
3	chr3:105421200-105465400	Weak transcription	Colonic Mucosa	Colon
4	chr3:105433600-105465600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:105438800-105465400	Weak transcription	Fetal Heart	heart
6	chr3:105439000-105465400	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:105439000-105465800	Weak transcription	NHLF	lung
8	chr3:105439000-105466200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:105439000-105466600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:105439000-105471200	Weak transcription	Fetal Thymus	thymus
11	chr3:105439000-105471400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:105439000-105471400	Weak transcription	HMEC	breast
13	chr3:105439000-105471600	Weak transcription	Fetal Brain Male	brain
14	chr3:105439000-105475800	Weak transcription	Esophagus	oesophagus
15	chr3:105439000-105477400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:105439000-105477400	Weak transcription	Lung	lung
17	chr3:105439000-105477400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:105439200-105464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:105439200-105464600	Weak transcription	HUVEC	blood vessel
20	chr3:105439200-105465200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:105439200-105465400	Weak transcription	Ovary	ovary
22	chr3:105439200-105465400	Weak transcription	Psoas Muscle	Psoas
23	chr3:105439200-105465600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:105439200-105465600	Weak transcription	Right Ventricle	heart
25	chr3:105439200-105465600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr3:105439200-105477200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:105439600-105465200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:105445800-105465600	Weak transcription	Gastric	stomach
29	chr3:105446600-105477600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:105448600-105465400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:105449000-105465000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:105449000-105465400	Weak transcription	Aorta	Aorta
33	chr3:105450200-105464800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:105450200-105465000	Weak transcription	Adipose Nuclei	Adipose
35	chr3:105450400-105465400	Strong transcription	Osteobl	bone
36	chr3:105451000-105464600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr3:105451200-105465200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:105452400-105465400	Weak transcription	Left Ventricle	heart
39	chr3:105452400-105477400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:105452600-105464600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr3:105452800-105477400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:105453000-105464600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:105453600-105465400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr3:105455000-105465200	Strong transcription	Placenta	Placenta
45	chr3:105458000-105475600	Weak transcription	Pancreas	Pancrea
46	chr3:105458400-105464600	Weak transcription	Primary hematopoietic stem cells	blood
47	chr3:105458400-105464800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:105458800-105464600	Weak transcription	Fetal Intestine Large	intestine
49	chr3:105458800-105465000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr3:105459000-105464600	Weak transcription	Fetal Intestine Small	intestine

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