Variant report

Variant	rs16852938
Chromosome Location	chr2:167926937-167926938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12104632	1.00[CEU][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16853195	0.83[ASW][hapmap];1.00[CEU][hapmap]
rs2303877	1.00[CEU][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57195645	0.80[ASN][1000 genomes]
rs57471298	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59394610	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60661347	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6432978	1.00[CEU][hapmap];0.87[GIH][hapmap]
rs73014186	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73015922	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7607357	1.00[CEU][hapmap];0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16852938	ZNF526	trans	brain	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167925400-167927400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:167925800-167927400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:167925800-167928200	Enhancers	HMEC	breast
4	chr2:167926000-167928200	Enhancers	NHEK	skin
5	chr2:167926600-167927000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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