Variant report

Variant	rs6432978
Chromosome Location	chr2:167989231-167989232
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12104632	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16852938	1.00[CEU][hapmap];0.87[GIH][hapmap]
rs16853128	0.86[JPT][hapmap]
rs16853187	0.95[EUR][1000 genomes]
rs16853195	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16853199	0.85[EUR][1000 genomes]
rs2303877	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55844329	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57471298	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58234151	0.95[EUR][1000 genomes]
rs58530903	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58784178	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58821409	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59196742	0.91[EUR][1000 genomes]
rs60016563	0.95[EUR][1000 genomes]
rs60159463	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60543052	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60661347	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60789884	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60851700	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60893609	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61164055	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73015922	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73015953	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73015970	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019961	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73025714	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73027829	0.95[EUR][1000 genomes]
rs73027847	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73029714	0.95[EUR][1000 genomes]
rs73970887	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7560840	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7607357	1.00[CEU][hapmap];0.86[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167984600-167989800	Weak transcription	Fetal Thymus	thymus
2	chr2:167985400-167991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:167985400-167991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:167987200-167989800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:167988600-167989800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:167988600-167990400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr2:167988600-167990400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr2:167988800-167991000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:167989000-167989400	Enhancers	Psoas Muscle	Psoas
10	chr2:167989000-167990400	Enhancers	Pancreas	Pancrea
11	chr2:167989200-167990000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:167989200-167990200	Weak transcription	HMEC	breast
13	chr2:167989200-167998600	Weak transcription	Left Ventricle	heart

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