Variant report

Variant	rs58784178
Chromosome Location	chr2:168001341-168001342
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr2:168001153-168001393	Hela-S3	cervix:	n/a	chr2:168001304-168001315
2	JUND	chr2:168000860-168001489	SK-N-SH	brain:	n/a	chr2:168001219-168001230 chr2:168001445-168001453
3	FOS	chr2:168001088-168001380	MCF10A-Er-Src	breast:	n/a	n/a
4	GATA3	chr2:168000769-168001574	SK-N-SH	brain:	n/a	chr2:168000785-168000793 chr2:168001134-168001144 chr2:168001541-168001550
5	CEBPB	chr2:168001168-168001354	HepG2	liver:	n/a	chr2:168001304-168001315
6	JUN	chr2:168001075-168001401	HUVEC	blood vessel:	n/a	n/a
7	TCF12	chr2:168000890-168001557	SK-N-SH	brain:	n/a	n/a
8	EP300	chr2:168001054-168001430	SK-N-SH_RA	brain:	n/a	n/a
9	GATA3	chr2:168000774-168001478	SK-N-SH	brain:	n/a	chr2:168000785-168000793 chr2:168001134-168001144
10	FOSL2	chr2:168000945-168001489	SK-N-SH	brain:	n/a	chr2:168001445-168001453
11	FOS	chr2:168001070-168001355	MCF10A-Er-Src	breast:	n/a	n/a
12	NFIC	chr2:168000892-168001489	SK-N-SH	brain:	n/a	n/a
13	STAT3	chr2:168001024-168001368	MCF10A-Er-Src	breast:	n/a	chr2:168001158-168001169
14	CEBPB	chr2:168001175-168001395	A549	lung:	n/a	chr2:168001304-168001315
15	PBX3	chr2:168000911-168001378	SK-N-SH	brain:	n/a	n/a
16	CEBPB	chr2:168000807-168001462	IMR90	lung:	n/a	chr2:168001304-168001315 chr2:168001018-168001029
17	PBX3	chr2:168000825-168001511	SK-N-SH	brain:	n/a	n/a
18	JUND	chr2:168000980-168001516	SK-N-SH	brain:	n/a	chr2:168001219-168001230 chr2:168001445-168001453
19	EP300	chr2:168000934-168001565	SK-N-SH	brain:	n/a	n/a
20	FOS	chr2:168001067-168001367	MCF10A-Er-Src	breast:	n/a	n/a
21	FOS	chr2:168001092-168001345	MCF10A-Er-Src	breast:	n/a	n/a
22	TCF12	chr2:168000793-168001444	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
XIRP2-AS1	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16853187	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16853195	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16853199	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2303877	0.86[EUR][1000 genomes]
rs55844329	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58234151	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58530903	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58821409	0.95[EUR][1000 genomes]
rs59196742	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60016563	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60159463	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60543052	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60789884	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60851700	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60893609	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61164055	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6432978	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73015953	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73015970	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73019961	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73025714	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73027829	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73027847	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73029714	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73970887	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7560840	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167996200-168001400	Enhancers	Fetal Heart	heart
2	chr2:167996200-168001400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr2:167999200-168001400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:167999400-168002200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:167999600-168002400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:167999800-168001600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:168000200-168005400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr2:168000200-168009600	Weak transcription	Psoas Muscle	Psoas
9	chr2:168000600-168003200	Weak transcription	HSMM	muscle
10	chr2:168000800-168001400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:168000800-168001400	Enhancers	Colon Smooth Muscle	Colon
12	chr2:168001000-168008600	Weak transcription	NHLF	lung

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