Variant report

Variant	rs60893609
Chromosome Location	chr2:168050376-168050377
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16853187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853195	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853199	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2303877	0.86[EUR][1000 genomes]
rs55844329	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58234151	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58530903	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58784178	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58821409	0.95[EUR][1000 genomes]
rs59196742	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60016563	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60159463	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60543052	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60789884	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60851700	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61164055	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432978	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73015953	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73015970	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73019961	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73025714	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73027829	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73027847	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73029714	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73970887	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7560840	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002883	chr2:168023423-168072247	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv583589	chr2:168024328-168073830	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv583590	chr2:168024328-168075621	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv997489	chr2:168025002-168072247	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1015022	chr2:168027758-168072247	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv583591	chr2:168037489-168132892	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168039000-168053000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:168043400-168051000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:168045000-168053000	Weak transcription	Fetal Intestine Small	intestine
4	chr2:168045400-168052600	Weak transcription	Fetal Lung	lung
5	chr2:168045400-168053200	Weak transcription	Fetal Brain Female	brain
6	chr2:168045600-168053000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:168045800-168051600	Weak transcription	Fetal Heart	heart
8	chr2:168046800-168052000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:168047000-168053000	Weak transcription	Colon Smooth Muscle	Colon
10	chr2:168048400-168052800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:168049400-168052000	Weak transcription	Psoas Muscle	Psoas
12	chr2:168049400-168052800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:168049600-168052200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr2:168049600-168052800	Weak transcription	Fetal Muscle Leg	muscle
15	chr2:168049600-168078800	Weak transcription	Right Ventricle	heart
16	chr2:168050000-168050800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr2:168050000-168052800	Weak transcription	Adipose Nuclei	Adipose
18	chr2:168050000-168052800	Weak transcription	NHLF	lung
19	chr2:168050000-168053000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:168050000-168053000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:168050000-168053000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr2:168050000-168053000	Weak transcription	NH-A	brain
23	chr2:168050200-168051800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:168050200-168052200	Weak transcription	Left Ventricle	heart
25	chr2:168050200-168052800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr2:168050200-168052800	Weak transcription	Right Atrium	heart
27	chr2:168050200-168052800	Weak transcription	NHDF-Ad	bronchial
28	chr2:168050200-168053000	Weak transcription	HMEC	breast
29	chr2:168050200-168053000	Weak transcription	HSMM	muscle
30	chr2:168050200-168053000	Weak transcription	HSMMtube	muscle
31	chr2:168050200-168053000	Weak transcription	Osteobl	bone

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