Variant report

Variant	rs58530903
Chromosome Location	chr2:167983500-167983501
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:167983370..167984614-chr2:168068319..168069263,7	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12104632	0.87[ASN][1000 genomes]
rs16853187	0.95[EUR][1000 genomes]
rs16853195	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853199	0.85[EUR][1000 genomes]
rs2303877	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55844329	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57471298	0.87[ASN][1000 genomes]
rs58234151	0.95[EUR][1000 genomes]
rs58784178	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58821409	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59196742	0.91[EUR][1000 genomes]
rs59394610	0.81[ASN][1000 genomes]
rs60016563	0.95[EUR][1000 genomes]
rs60159463	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60543052	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60661347	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60789884	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60851700	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60893609	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61164055	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6432978	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73015922	0.87[ASN][1000 genomes]
rs73015953	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73015970	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73019961	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025714	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73027829	0.95[EUR][1000 genomes]
rs73027847	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73029714	0.95[EUR][1000 genomes]
rs73970887	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7560840	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167980200-167983600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:167980400-167983600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:167980600-167984200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:167982800-167983800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:167983000-167988400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:167983400-167989000	Weak transcription	Pancreas	Pancrea

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